co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G004222

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
2	GO:0010157: response to chlorate	0.00E+00
3	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
4	GO:0043686: co-translational protein modification	0.00E+00
5	GO:0043043: peptide biosynthetic process	0.00E+00
6	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
7	GO:0042407: cristae formation	0.00E+00
8	GO:0090391: granum assembly	0.00E+00
9	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
10	GO:0043953: protein transport by the Tat complex	0.00E+00
11	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
12	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
13	GO:1901671: positive regulation of superoxide dismutase activity	0.00E+00
14	GO:0032543: mitochondrial translation	0.00E+00
15	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
16	GO:1901259: chloroplast rRNA processing	0.00E+00
17	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
18	GO:0032544: plastid translation	0.00E+00
19	GO:1900865: chloroplast RNA modification	0.00E+00
20	GO:0009658: chloroplast organization	2.49E-16
21	GO:0010027: thylakoid membrane organization	4.72E-14
22	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.17E-13
23	GO:0009902: chloroplast relocation	1.65E-09
24	GO:0042793: transcription from plastid promoter	4.81E-09
25	GO:0006655: phosphatidylglycerol biosynthetic process	4.81E-09
26	GO:0006364: rRNA processing	4.26E-08
27	GO:0010207: photosystem II assembly	9.30E-08
28	GO:0045036: protein targeting to chloroplast	1.08E-07
29	GO:0016226: iron-sulfur cluster assembly	4.11E-07
30	GO:0006457: protein folding	1.25E-06
31	GO:0006779: porphyrin-containing compound biosynthetic process	2.21E-06
32	GO:0035304: regulation of protein dephosphorylation	2.88E-06
33	GO:0006399: tRNA metabolic process	7.18E-06
34	GO:0006418: tRNA aminoacylation for protein translation	1.16E-05
35	GO:0045038: protein import into chloroplast thylakoid membrane	1.28E-05
36	GO:0045893: positive regulation of transcription, DNA-templated	1.87E-05
37	GO:0015995: chlorophyll biosynthetic process	2.32E-04
38	GO:0006412: translation	2.56E-04
39	GO:0009073: aromatic amino acid family biosynthetic process	2.66E-04
40	GO:0006733: oxidoreduction coenzyme metabolic process	2.91E-04
41	GO:0010103: stomatal complex morphogenesis	4.07E-04
42	GO:0006782: protoporphyrinogen IX biosynthetic process	5.90E-04
43	GO:0009117: nucleotide metabolic process	5.90E-04
44	GO:0045037: protein import into chloroplast stroma	5.90E-04
45	GO:0006353: DNA-templated transcription, termination	5.90E-04
46	GO:0009098: leucine biosynthetic process	5.90E-04
47	GO:0016556: mRNA modification	5.93E-04
48	GO:0006546: glycine catabolic process	7.76E-04
49	GO:0006184: obsolete GTP catabolic process	9.38E-04
50	GO:0000096: sulfur amino acid metabolic process	9.98E-04
51	GO:0019748: secondary metabolic process	9.98E-04
52	GO:0010468: regulation of gene expression	9.98E-04
53	GO:0009306: protein secretion	1.51E-03
54	GO:0008361: regulation of cell size	1.87E-03
55	GO:0006434: seryl-tRNA aminoacylation	1.87E-03
56	GO:0006433: prolyl-tRNA aminoacylation	1.87E-03
57	GO:0006423: cysteinyl-tRNA aminoacylation	1.87E-03
58	GO:0009069: serine family amino acid metabolic process	1.87E-03
59	GO:0006430: lysyl-tRNA aminoacylation	1.87E-03
60	GO:0006429: leucyl-tRNA aminoacylation	1.87E-03
61	GO:0019344: cysteine biosynthetic process	1.93E-03
62	GO:0006098: pentose-phosphate shunt	2.00E-03
63	GO:0034660: ncRNA metabolic process	2.10E-03
64	GO:0019538: protein metabolic process	2.10E-03
65	GO:0009106: lipoate metabolic process	2.10E-03
66	GO:0006766: vitamin metabolic process	2.10E-03
67	GO:0009108: coenzyme biosynthetic process	2.10E-03
68	GO:0033014: tetrapyrrole biosynthetic process	2.10E-03
69	GO:0009793: embryo development ending in seed dormancy	2.14E-03
70	GO:0030154: cell differentiation	2.18E-03
71	GO:0009082: branched-chain amino acid biosynthetic process	2.80E-03
72	GO:0048481: plant ovule development	3.33E-03
73	GO:0009773: photosynthetic electron transport in photosystem I	3.48E-03
74	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.66E-03
75	GO:0009695: jasmonic acid biosynthetic process	4.01E-03
76	GO:0009642: response to light intensity	4.26E-03
77	GO:0048653: anther development	4.26E-03
78	GO:0010380: regulation of chlorophyll biosynthetic process	4.26E-03
79	GO:0044272: sulfur compound biosynthetic process	4.26E-03
80	GO:0019464: glycine decarboxylation via glycine cleavage system	4.26E-03
81	GO:0006432: phenylalanyl-tRNA aminoacylation	4.26E-03
82	GO:0019481: L-alanine catabolic process, by transamination	4.26E-03
83	GO:0010109: regulation of photosynthesis	4.26E-03
84	GO:0010236: plastoquinone biosynthetic process	4.26E-03
85	GO:0042372: phylloquinone biosynthetic process	4.26E-03
86	GO:0006354: DNA-templated transcription, elongation	5.70E-03
87	GO:0051085: chaperone mediated protein folding requiring cofactor	7.25E-03
88	GO:0016075: rRNA catabolic process	7.25E-03
89	GO:0043067: regulation of programmed cell death	7.25E-03
90	GO:0009247: glycolipid biosynthetic process	7.25E-03
91	GO:0000304: response to singlet oxygen	7.25E-03
92	GO:0006450: regulation of translational fidelity	7.25E-03
93	GO:0009409: response to cold	8.03E-03
94	GO:0031408: oxylipin biosynthetic process	9.74E-03
95	GO:0051607: defense response to virus	9.74E-03
96	GO:0030259: lipid glycosylation	1.07E-02
97	GO:0042026: protein refolding	1.07E-02
98	GO:0006165: nucleoside diphosphate phosphorylation	1.07E-02
99	GO:0019216: regulation of lipid metabolic process	1.07E-02
100	GO:0006228: UTP biosynthetic process	1.07E-02
101	GO:0010417: glucuronoxylan biosynthetic process	1.07E-02
102	GO:0019375: galactolipid biosynthetic process	1.07E-02
103	GO:0006183: GTP biosynthetic process	1.07E-02
104	GO:0006241: CTP biosynthetic process	1.07E-02
105	GO:0007389: pattern specification process	1.07E-02
106	GO:0009790: embryo development	1.11E-02
107	GO:0042545: cell wall modification	1.31E-02
108	GO:0009772: photosynthetic electron transport in photosystem II	1.47E-02
109	GO:0006081: cellular aldehyde metabolic process	1.47E-02
110	GO:0009308: amine metabolic process	1.47E-02
111	GO:0019684: photosynthesis, light reaction	1.50E-02
112	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.70E-02
113	GO:0044267: cellular protein metabolic process	1.70E-02
114	GO:0010267: production of ta-siRNAs involved in RNA interference	1.70E-02
115	GO:0007005: mitochondrion organization	1.91E-02
116	GO:0006749: glutathione metabolic process	1.91E-02
117	GO:0031347: regulation of defense response	1.91E-02
118	GO:0009627: systemic acquired resistance	1.91E-02
119	GO:0006414: translational elongation	2.01E-02
120	GO:0006189: 'de novo' IMP biosynthetic process	2.39E-02
121	GO:0010206: photosystem II repair	2.39E-02
122	GO:0009926: auxin polar transport	2.39E-02
123	GO:0010205: photoinhibition	2.39E-02
124	GO:0032880: regulation of protein localization	2.39E-02
125	GO:0006032: chitin catabolic process	2.39E-02
126	GO:0009704: de-etiolation	2.39E-02
127	GO:0009411: response to UV	2.39E-02
128	GO:0010228: vegetative to reproductive phase transition of meristem	2.68E-02
129	GO:0009408: response to heat	2.72E-02
130	GO:0043039: tRNA aminoacylation	2.91E-02
131	GO:0030245: cellulose catabolic process	2.91E-02
132	GO:0051604: protein maturation	2.91E-02
133	GO:0006200: obsolete ATP catabolic process	3.06E-02
134	GO:0009965: leaf morphogenesis	3.26E-02
135	GO:0040007: growth	3.47E-02
136	GO:0010015: root morphogenesis	3.47E-02
137	GO:0045087: innate immune response	3.47E-02
138	GO:0001666: response to hypoxia	3.47E-02
139	GO:0009072: aromatic amino acid family metabolic process	3.47E-02
140	GO:0009585: red, far-red light phototransduction	3.47E-02
141	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.47E-02
142	GO:0006508: proteolysis	3.56E-02
143	GO:0000302: response to reactive oxygen species	4.07E-02
144	GO:0009832: plant-type cell wall biogenesis	4.07E-02
145	GO:0009834: plant-type secondary cell wall biogenesis	4.07E-02
146	GO:0009407: toxin catabolic process	4.07E-02
147	GO:0042742: defense response to bacterium	4.46E-02
148	GO:0016117: carotenoid biosynthetic process	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
4	GO:0042586: peptide deformylase activity	0.00E+00
5	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
6	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
7	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
8	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
9	GO:0003862: 3-isopropylmalate dehydrogenase activity	0.00E+00
10	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
11	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
12	GO:0005048: signal sequence binding	0.00E+00
13	GO:0004812: aminoacyl-tRNA ligase activity	1.74E-05
14	GO:0004252: serine-type endopeptidase activity	3.93E-05
15	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.26E-05
16	GO:0004853: uroporphyrinogen decarboxylase activity	9.26E-05
17	GO:0000774: adenyl-nucleotide exchange factor activity	2.91E-04
18	GO:0004659: prenyltransferase activity	5.90E-04
19	GO:0046914: transition metal ion binding	5.93E-04
20	GO:0003735: structural constituent of ribosome	1.35E-03
21	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.87E-03
22	GO:0004831: tyrosine-tRNA ligase activity	1.87E-03
23	GO:0035250: UDP-galactosyltransferase activity	1.87E-03
24	GO:0004362: glutathione-disulfide reductase activity	1.87E-03
25	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.87E-03
26	GO:0031177: phosphopantetheine binding	1.87E-03
27	GO:0008194: UDP-glycosyltransferase activity	1.87E-03
28	GO:0004817: cysteine-tRNA ligase activity	1.87E-03
29	GO:0004824: lysine-tRNA ligase activity	1.87E-03
30	GO:0004827: proline-tRNA ligase activity	1.87E-03
31	GO:0016851: magnesium chelatase activity	1.87E-03
32	GO:0004823: leucine-tRNA ligase activity	1.87E-03
33	GO:0004828: serine-tRNA ligase activity	1.87E-03
34	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2.10E-03
35	GO:0008312: 7S RNA binding	2.80E-03
36	GO:0051087: chaperone binding	2.80E-03
37	GO:0051082: unfolded protein binding	2.81E-03
38	GO:0031072: heat shock protein binding	4.01E-03
39	GO:0051920: peroxiredoxin activity	4.26E-03
40	GO:0016630: protochlorophyllide reductase activity	4.26E-03
41	GO:0004826: phenylalanine-tRNA ligase activity	4.26E-03
42	GO:0004462: lactoylglutathione lyase activity	4.26E-03
43	GO:0045485: omega-6 fatty acid desaturase activity	4.26E-03
44	GO:0005525: GTP binding	4.40E-03
45	GO:0015020: glucuronosyltransferase activity	7.25E-03
46	GO:0080116: glucuronoxylan glucuronosyltransferase activity	7.25E-03
47	GO:0003959: NADPH dehydrogenase activity	7.25E-03
48	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	1.07E-02
49	GO:0070569: uridylyltransferase activity	1.07E-02
50	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	1.07E-02
51	GO:0004765: shikimate kinase activity	1.07E-02
52	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	1.07E-02
53	GO:0004550: nucleoside diphosphate kinase activity	1.07E-02
54	GO:0016209: antioxidant activity	1.07E-02
55	GO:0003913: DNA photolyase activity	1.07E-02
56	GO:0005507: copper ion binding	1.19E-02
57	GO:0003924: GTPase activity	1.25E-02
58	GO:0016831: carboxy-lyase activity	1.31E-02
59	GO:0003746: translation elongation factor activity	1.34E-02
60	GO:0016987: sigma factor activity	1.47E-02
61	GO:0008233: peptidase activity	1.77E-02
62	GO:0000166: nucleotide binding	1.83E-02
63	GO:0008173: RNA methyltransferase activity	1.91E-02
64	GO:0000287: magnesium ion binding	1.99E-02
65	GO:0008565: protein transporter activity	2.38E-02
66	GO:0008810: cellulase activity	2.39E-02
67	GO:0004525: ribonuclease III activity	2.39E-02
68	GO:0004568: chitinase activity	2.39E-02
69	GO:0043022: ribosome binding	2.91E-02
70	GO:0042803: protein homodimerization activity	3.06E-02
71	GO:0019843: rRNA binding	3.20E-02
72	GO:0008266: poly(U) RNA binding	3.47E-02
73	GO:0005524: ATP binding	3.94E-02
74	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.07E-02
75	GO:0000049: tRNA binding	4.07E-02
76	GO:0008236: serine-type peptidase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0080085: signal recognition particle, chloroplast targeting	0.00E+00
2	GO:0042646: plastid nucleoid	0.00E+00
3	GO:0055035: plastid thylakoid membrane	0.00E+00
4	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
5	GO:0009507: chloroplast	1.69E-41
6	GO:0009570: chloroplast stroma	1.50E-35
7	GO:0009941: chloroplast envelope	1.03E-32
8	GO:0009535: chloroplast thylakoid membrane	2.07E-12
9	GO:0009579: thylakoid	6.84E-10
10	GO:0009532: plastid stroma	1.36E-09
11	GO:0009840: chloroplastic endopeptidase Clp complex	4.08E-07
12	GO:0005840: ribosome	3.49E-05
13	GO:0009534: chloroplast thylakoid	2.32E-04
14	GO:0009295: nucleoid	7.76E-04
15	GO:0009706: chloroplast inner membrane	8.41E-04
16	GO:0030529: intracellular ribonucleoprotein complex	1.69E-03
17	GO:0009526: plastid envelope	1.87E-03
18	GO:0005960: glycine cleavage complex	1.87E-03
19	GO:0000311: plastid large ribosomal subunit	1.87E-03
20	GO:0048500: signal recognition particle	2.10E-03
21	GO:0010319: stromule	2.41E-03
22	GO:0009536: plastid	3.52E-03
23	GO:0009533: chloroplast stromal thylakoid	4.26E-03
24	GO:0005759: mitochondrial matrix	6.62E-03
25	GO:0048046: apoplast	1.14E-02
26	GO:0009707: chloroplast outer membrane	1.47E-02
27	GO:0019898: extrinsic component of membrane	1.91E-02
28	GO:0019013: viral nucleocapsid	2.14E-02
29	GO:0005739: mitochondrion	2.26E-02
30	GO:0009654: photosystem II oxygen evolving complex	2.39E-02
31	GO:0005622: intracellular	2.54E-02