co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G004131

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046506: sulfolipid biosynthetic process	0.00E+00
2	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
3	GO:0042780: tRNA 3'-end processing	0.00E+00
4	GO:1900865: chloroplast RNA modification	0.00E+00
5	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
6	GO:0048564: photosystem I assembly	0.00E+00
7	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
8	GO:0043953: protein transport by the Tat complex	0.00E+00
9	GO:0009658: chloroplast organization	2.40E-09
10	GO:0006457: protein folding	1.48E-08
11	GO:0006399: tRNA metabolic process	2.60E-07
12	GO:0006364: rRNA processing	3.00E-07
13	GO:0010027: thylakoid membrane organization	2.34E-06
14	GO:0045036: protein targeting to chloroplast	3.61E-06
15	GO:0009306: protein secretion	5.82E-06
16	GO:1901671: positive regulation of superoxide dismutase activity	1.43E-05
17	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.05E-05
18	GO:0006782: protoporphyrinogen IX biosynthetic process	1.10E-04
19	GO:0010468: regulation of gene expression	1.97E-04
20	GO:0010103: stomatal complex morphogenesis	4.01E-04
21	GO:0032543: mitochondrial translation	6.53E-04
22	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	6.53E-04
23	GO:0006591: ornithine metabolic process	6.53E-04
24	GO:0009959: negative gravitropism	6.53E-04
25	GO:0009407: toxin catabolic process	1.01E-03
26	GO:0045893: positive regulation of transcription, DNA-templated	1.20E-03
27	GO:0016556: mRNA modification	1.25E-03
28	GO:0009073: aromatic amino acid family biosynthetic process	1.29E-03
29	GO:0006779: porphyrin-containing compound biosynthetic process	1.51E-03
30	GO:0030308: negative regulation of cell growth	1.51E-03
31	GO:0019481: L-alanine catabolic process, by transamination	1.51E-03
32	GO:0009642: response to light intensity	1.51E-03
33	GO:0016226: iron-sulfur cluster assembly	1.89E-03
34	GO:0006655: phosphatidylglycerol biosynthetic process	2.10E-03
35	GO:0042793: transcription from plastid promoter	2.10E-03
36	GO:0051607: defense response to virus	2.10E-03
37	GO:0009231: riboflavin biosynthetic process	2.50E-03
38	GO:0009247: glycolipid biosynthetic process	2.50E-03
39	GO:0019760: glucosinolate metabolic process	2.50E-03
40	GO:0006450: regulation of translational fidelity	2.50E-03
41	GO:0006733: oxidoreduction coenzyme metabolic process	2.50E-03
42	GO:0010038: response to metal ion	2.50E-03
43	GO:0051085: chaperone mediated protein folding requiring cofactor	2.50E-03
44	GO:0010731: protein glutathionylation	2.50E-03
45	GO:0016075: rRNA catabolic process	2.50E-03
46	GO:0019684: photosynthesis, light reaction	3.20E-03
47	GO:0010267: production of ta-siRNAs involved in RNA interference	3.64E-03
48	GO:0035196: production of miRNAs involved in gene silencing by miRNA	3.64E-03
49	GO:0009117: nucleotide metabolic process	3.69E-03
50	GO:0019375: galactolipid biosynthetic process	3.69E-03
51	GO:0006183: GTP biosynthetic process	3.69E-03
52	GO:0006241: CTP biosynthetic process	3.69E-03
53	GO:0045038: protein import into chloroplast thylakoid membrane	3.69E-03
54	GO:0000373: Group II intron splicing	3.69E-03
55	GO:0042026: protein refolding	3.69E-03
56	GO:0006165: nucleoside diphosphate phosphorylation	3.69E-03
57	GO:0006228: UTP biosynthetic process	3.69E-03
58	GO:0009627: systemic acquired resistance	4.10E-03
59	GO:0019748: secondary metabolic process	5.02E-03
60	GO:0009308: amine metabolic process	5.02E-03
61	GO:0010207: photosystem II assembly	5.61E-03
62	GO:0006749: glutathione metabolic process	6.50E-03
63	GO:0031347: regulation of defense response	6.50E-03
64	GO:0000105: histidine biosynthetic process	6.50E-03
65	GO:0006396: RNA processing	7.09E-03
66	GO:0009902: chloroplast relocation	7.53E-03
67	GO:0032880: regulation of protein localization	8.11E-03
68	GO:0006766: vitamin metabolic process	8.11E-03
69	GO:0009411: response to UV	8.11E-03
70	GO:0009108: coenzyme biosynthetic process	8.11E-03
71	GO:0010583: response to cyclopentenone	8.11E-03
72	GO:0006189: 'de novo' IMP biosynthetic process	8.11E-03
73	GO:0034660: ncRNA metabolic process	8.11E-03
74	GO:0009106: lipoate metabolic process	8.11E-03
75	GO:0009735: response to cytokinin	8.92E-03
76	GO:0019252: starch biosynthetic process	9.24E-03
77	GO:0051604: protein maturation	9.86E-03
78	GO:0019344: cysteine biosynthetic process	1.04E-02
79	GO:0045087: innate immune response	1.17E-02
80	GO:0001666: response to hypoxia	1.17E-02
81	GO:0009585: red, far-red light phototransduction	1.17E-02
82	GO:0000302: response to reactive oxygen species	1.37E-02
83	GO:0000023: maltose metabolic process	1.48E-02
84	GO:0009723: response to ethylene	1.68E-02
85	GO:0006546: glycine catabolic process	1.80E-02
86	GO:0009409: response to cold	1.85E-02
87	GO:0045454: cell redox homeostasis	2.02E-02
88	GO:0015995: chlorophyll biosynthetic process	2.12E-02
89	GO:0008299: isoprenoid biosynthetic process	2.52E-02
90	GO:0006636: unsaturated fatty acid biosynthetic process	2.52E-02
91	GO:0009630: gravitropism	2.77E-02
92	GO:0042545: cell wall modification	2.77E-02
93	GO:0030154: cell differentiation	3.04E-02
94	GO:0009657: plastid organization	3.04E-02
95	GO:0009408: response to heat	3.16E-02
96	GO:0016036: cellular response to phosphate starvation	3.32E-02
97	GO:0008219: cell death	3.32E-02
98	GO:0044267: cellular protein metabolic process	3.32E-02
99	GO:0006508: proteolysis	3.36E-02
100	GO:0006807: nitrogen compound metabolic process	3.90E-02
101	GO:0035304: regulation of protein dephosphorylation	3.90E-02
102	GO:0009695: jasmonic acid biosynthetic process	4.21E-02
103	GO:0006869: lipid transport	4.21E-02
104	GO:0009416: response to light stimulus	4.27E-02

Rank	GO Term	Adjusted P value
1	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
2	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
3	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
4	GO:0003919: FMN adenylyltransferase activity	0.00E+00
5	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
6	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
7	GO:0004853: uroporphyrinogen decarboxylase activity	1.43E-05
8	GO:0000774: adenyl-nucleotide exchange factor activity	5.02E-05
9	GO:0051082: unfolded protein binding	9.47E-05
10	GO:0004525: ribonuclease III activity	4.45E-04
11	GO:0008565: protein transporter activity	5.46E-04
12	GO:0051087: chaperone binding	6.06E-04
13	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.53E-04
14	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.53E-04
15	GO:0004362: glutathione-disulfide reductase activity	6.53E-04
16	GO:0004585: ornithine carbamoyltransferase activity	6.53E-04
17	GO:0008146: sulfotransferase activity	6.53E-04
18	GO:0005507: copper ion binding	1.04E-03
19	GO:0046914: transition metal ion binding	1.25E-03
20	GO:0005496: steroid binding	1.51E-03
21	GO:0016630: protochlorophyllide reductase activity	1.51E-03
22	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.51E-03
23	GO:0047134: protein-disulfide reductase activity	1.51E-03
24	GO:0003959: NADPH dehydrogenase activity	2.50E-03
25	GO:0016743: carboxyl- or carbamoyltransferase activity	2.50E-03
26	GO:0016831: carboxy-lyase activity	2.79E-03
27	GO:0004765: shikimate kinase activity	3.69E-03
28	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3.69E-03
29	GO:0004550: nucleoside diphosphate kinase activity	3.69E-03
30	GO:0070569: uridylyltransferase activity	3.69E-03
31	GO:0031072: heat shock protein binding	5.11E-03
32	GO:0008173: RNA methyltransferase activity	6.50E-03
33	GO:0016817: hydrolase activity, acting on acid anhydrides	6.50E-03
34	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	8.11E-03
35	GO:0004252: serine-type endopeptidase activity	8.78E-03
36	GO:0043022: ribosome binding	9.86E-03
37	GO:0008266: poly(U) RNA binding	1.17E-02
38	GO:0042803: protein homodimerization activity	2.49E-02
39	GO:0000287: magnesium ion binding	2.51E-02
40	GO:0048038: quinone binding	2.52E-02
41	GO:0005216: ion channel activity	2.77E-02
42	GO:0003723: RNA binding	3.13E-02
43	GO:0015035: protein disulfide oxidoreductase activity	3.32E-02
44	GO:0004222: metalloendopeptidase activity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	1.33E-19
4	GO:0009941: chloroplast envelope	9.40E-10
5	GO:0009570: chloroplast stroma	1.36E-09
6	GO:0009535: chloroplast thylakoid membrane	1.52E-09
7	GO:0009579: thylakoid	2.08E-07
8	GO:0009532: plastid stroma	1.89E-05
9	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	6.53E-04
10	GO:0009526: plastid envelope	6.53E-04
11	GO:0005759: mitochondrial matrix	9.27E-04
12	GO:0009536: plastid	3.05E-03
13	GO:0009534: chloroplast thylakoid	3.55E-03
14	GO:0019013: viral nucleocapsid	4.61E-03
15	GO:0009840: chloroplastic endopeptidase Clp complex	5.02E-03
16	GO:0009706: chloroplast inner membrane	6.25E-03
17	GO:0019898: extrinsic component of membrane	6.50E-03
18	GO:0009654: photosystem II oxygen evolving complex	8.11E-03
19	GO:0010319: stromule	1.21E-02
20	GO:0031977: thylakoid lumen	1.30E-02
21	GO:0009295: nucleoid	1.80E-02
22	GO:0005739: mitochondrion	1.88E-02
23	GO:0009543: chloroplast thylakoid lumen	2.26E-02