co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G003869

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
2	GO:0009234: menaquinone biosynthetic process	0.00E+00
3	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
4	GO:0010028: xanthophyll cycle	0.00E+00
5	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.82E-16
6	GO:0006098: pentose-phosphate shunt	8.53E-13
7	GO:0016117: carotenoid biosynthetic process	1.54E-11
8	GO:0010207: photosystem II assembly	4.46E-11
9	GO:0010027: thylakoid membrane organization	2.26E-10
10	GO:0015995: chlorophyll biosynthetic process	1.20E-08
11	GO:0009902: chloroplast relocation	1.23E-08
12	GO:0042793: transcription from plastid promoter	1.33E-08
13	GO:0006636: unsaturated fatty acid biosynthetic process	2.10E-08
14	GO:0043085: positive regulation of catalytic activity	2.15E-08
15	GO:0006364: rRNA processing	1.73E-07
16	GO:0015979: photosynthesis	5.57E-07
17	GO:0009108: coenzyme biosynthetic process	2.86E-06
18	GO:0034660: ncRNA metabolic process	2.86E-06
19	GO:0009106: lipoate metabolic process	2.86E-06
20	GO:0006766: vitamin metabolic process	2.86E-06
21	GO:0006546: glycine catabolic process	2.45E-05
22	GO:0045037: protein import into chloroplast stroma	4.33E-05
23	GO:0000023: maltose metabolic process	6.65E-05
24	GO:0000096: sulfur amino acid metabolic process	7.95E-05
25	GO:0019748: secondary metabolic process	7.95E-05
26	GO:0010155: regulation of proton transport	1.06E-04
27	GO:0009773: photosynthetic electron transport in photosystem I	1.51E-04
28	GO:0046777: protein autophosphorylation	1.51E-04
29	GO:0009695: jasmonic acid biosynthetic process	1.79E-04
30	GO:0010206: photosystem II repair	1.88E-04
31	GO:0009072: aromatic amino acid family metabolic process	3.47E-04
32	GO:0006573: valine metabolic process	3.74E-04
33	GO:0009073: aromatic amino acid family biosynthetic process	4.47E-04
34	GO:0019252: starch biosynthetic process	4.93E-04
35	GO:0019761: glucosinolate biosynthetic process	5.50E-04
36	GO:0006354: DNA-templated transcription, elongation	5.53E-04
37	GO:0016556: mRNA modification	5.53E-04
38	GO:0016226: iron-sulfur cluster assembly	6.68E-04
39	GO:0045036: protein targeting to chloroplast	8.10E-04
40	GO:0042372: phylloquinone biosynthetic process	8.76E-04
41	GO:0044272: sulfur compound biosynthetic process	8.76E-04
42	GO:0006875: cellular metal ion homeostasis	8.76E-04
43	GO:0006655: phosphatidylglycerol biosynthetic process	9.57E-04
44	GO:0019684: photosynthesis, light reaction	1.47E-03
45	GO:0030154: cell differentiation	1.47E-03
46	GO:0009657: plastid organization	1.47E-03
47	GO:0007186: G-protein coupled receptor signaling pathway	1.48E-03
48	GO:0006733: oxidoreduction coenzyme metabolic process	1.48E-03
49	GO:0016024: CDP-diacylglycerol biosynthetic process	1.48E-03
50	GO:0010103: stomatal complex morphogenesis	1.88E-03
51	GO:0045038: protein import into chloroplast thylakoid membrane	2.15E-03
52	GO:0019216: regulation of lipid metabolic process	2.15E-03
53	GO:0009117: nucleotide metabolic process	2.15E-03
54	GO:0045893: positive regulation of transcription, DNA-templated	2.40E-03
55	GO:0070838: divalent metal ion transport	2.89E-03
56	GO:0006796: phosphate-containing compound metabolic process	2.89E-03
57	GO:0006569: tryptophan catabolic process	2.89E-03
58	GO:0060416: response to growth hormone	2.89E-03
59	GO:0009813: flavonoid biosynthetic process	2.89E-03
60	GO:0034755: iron ion transmembrane transport	2.89E-03
61	GO:0015994: chlorophyll metabolic process	2.89E-03
62	GO:0000413: protein peptidyl-prolyl isomerization	3.39E-03
63	GO:0006568: tryptophan metabolic process	3.76E-03
64	GO:0009814: defense response, incompatible interaction	4.68E-03
65	GO:0030003: cellular cation homeostasis	4.68E-03
66	GO:0009704: de-etiolation	4.68E-03
67	GO:0009411: response to UV	4.68E-03
68	GO:0080167: response to karrikin	4.88E-03
69	GO:0000162: tryptophan biosynthetic process	6.73E-03
70	GO:0009684: indoleacetic acid biosynthetic process	7.85E-03
71	GO:0006006: glucose metabolic process	9.04E-03
72	GO:0048527: lateral root development	9.04E-03
73	GO:0009697: salicylic acid biosynthetic process	9.04E-03
74	GO:0006814: sodium ion transport	9.04E-03
75	GO:0008652: cellular amino acid biosynthetic process	9.59E-03
76	GO:0009765: photosynthesis, light harvesting	1.03E-02
77	GO:0009965: leaf morphogenesis	1.18E-02
78	GO:0009767: photosynthetic electron transport chain	1.29E-02
79	GO:0031408: oxylipin biosynthetic process	1.29E-02
80	GO:0006631: fatty acid metabolic process	1.73E-02
81	GO:0018298: protein-chromophore linkage	1.89E-02
82	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.89E-02
83	GO:0006417: regulation of translation	1.89E-02
84	GO:0009416: response to light stimulus	1.94E-02
85	GO:0035304: regulation of protein dephosphorylation	2.22E-02
86	GO:0010182: sugar mediated signaling pathway	2.22E-02
87	GO:0010224: response to UV-B	2.22E-02
88	GO:0009817: defense response to fungus, incompatible interaction	2.40E-02
89	GO:0042742: defense response to bacterium	3.33E-02
90	GO:0009735: response to cytokinin	3.52E-02
91	GO:0006096: glycolytic process	3.83E-02
92	GO:0019344: cysteine biosynthetic process	3.94E-02
93	GO:0009637: response to blue light	3.94E-02
94	GO:0010114: response to red light	4.37E-02
95	GO:0010218: response to far red light	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
3	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
6	GO:0004802: transketolase activity	0.00E+00
7	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.21E-05
10	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	3.74E-04
11	GO:0004618: phosphoglycerate kinase activity	3.74E-04
12	GO:0015088: copper uptake transmembrane transporter activity	3.74E-04
13	GO:0045430: chalcone isomerase activity	8.76E-04
14	GO:0004605: phosphatidate cytidylyltransferase activity	8.76E-04
15	GO:0033897: ribonuclease T2 activity	1.48E-03
16	GO:0016872: intramolecular lyase activity	1.48E-03
17	GO:0004332: fructose-bisphosphate aldolase activity	2.15E-03
18	GO:0004765: shikimate kinase activity	2.15E-03
19	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.89E-03
20	GO:0005381: iron ion transmembrane transporter activity	2.89E-03
21	GO:0004834: tryptophan synthase activity	3.76E-03
22	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.02E-03
23	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	4.68E-03
24	GO:0004427: inorganic diphosphatase activity	6.73E-03
25	GO:0000049: tRNA binding	7.85E-03
26	GO:0003690: double-stranded DNA binding	1.03E-02
27	GO:0016779: nucleotidyltransferase activity	1.37E-02
28	GO:0051287: NAD binding	1.64E-02
29	GO:0016168: chlorophyll binding	1.89E-02
30	GO:0009055: electron carrier activity	2.15E-02
31	GO:0051537: 2 iron, 2 sulfur cluster binding	2.40E-02
32	GO:0051539: 4 iron, 4 sulfur cluster binding	3.33E-02
33	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.73E-02
34	GO:0008236: serine-type peptidase activity	3.94E-02
35	GO:0004364: glutathione transferase activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0009507: chloroplast	1.53E-23
3	GO:0009543: chloroplast thylakoid lumen	6.31E-15
4	GO:0009941: chloroplast envelope	6.66E-14
5	GO:0009570: chloroplast stroma	1.01E-13
6	GO:0009535: chloroplast thylakoid membrane	3.35E-13
7	GO:0009579: thylakoid	1.21E-11
8	GO:0031977: thylakoid lumen	1.89E-09
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.79E-09
10	GO:0009534: chloroplast thylakoid	3.52E-07
11	GO:0009523: photosystem II	8.31E-07
12	GO:0019898: extrinsic component of membrane	1.28E-04
13	GO:0009654: photosystem II oxygen evolving complex	1.88E-04
14	GO:0009527: plastid outer membrane	3.74E-04
15	GO:0030093: chloroplast photosystem I	3.74E-04
16	GO:0009528: plastid inner membrane	3.74E-04
17	GO:0042406: extrinsic component of endoplasmic reticulum membrane	3.74E-04
18	GO:0009508: plastid chromosome	2.89E-03
19	GO:0010319: stromule	5.45E-03
20	GO:0009532: plastid stroma	5.66E-03
21	GO:0010287: plastoglobule	9.59E-03
22	GO:0009295: nucleoid	1.03E-02
23	GO:0009522: photosystem I	2.22E-02
24	GO:0009706: chloroplast inner membrane	2.75E-02
25	GO:0009705: plant-type vacuole membrane	4.15E-02
26	GO:0015934: large ribosomal subunit	4.37E-02
27	GO:0005777: peroxisome	4.77E-02