co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G003765

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043686: co-translational protein modification	0.00E+00
2	GO:0042407: cristae formation	0.00E+00
3	GO:0090391: granum assembly	0.00E+00
4	GO:0048564: photosystem I assembly	0.00E+00
5	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
6	GO:0043953: protein transport by the Tat complex	0.00E+00
7	GO:0000372: Group I intron splicing	0.00E+00
8	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
9	GO:0032543: mitochondrial translation	0.00E+00
10	GO:0046506: sulfolipid biosynthetic process	0.00E+00
11	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
12	GO:1901259: chloroplast rRNA processing	0.00E+00
13	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
14	GO:0090342: regulation of cell aging	0.00E+00
15	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
16	GO:0042780: tRNA 3'-end processing	0.00E+00
17	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
18	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
19	GO:0009658: chloroplast organization	2.67E-14
20	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.53E-10
21	GO:0006364: rRNA processing	5.23E-09
22	GO:0010027: thylakoid membrane organization	7.08E-09
23	GO:0006457: protein folding	1.94E-08
24	GO:0006399: tRNA metabolic process	4.90E-08
25	GO:0009306: protein secretion	6.11E-07
26	GO:0006655: phosphatidylglycerol biosynthetic process	2.36E-06
27	GO:0042793: transcription from plastid promoter	2.36E-06
28	GO:0010207: photosystem II assembly	3.13E-06
29	GO:0009902: chloroplast relocation	4.80E-06
30	GO:0045038: protein import into chloroplast thylakoid membrane	6.97E-06
31	GO:0010103: stomatal complex morphogenesis	1.50E-05
32	GO:0016556: mRNA modification	1.79E-05
33	GO:0006779: porphyrin-containing compound biosynthetic process	2.76E-05
34	GO:0045036: protein targeting to chloroplast	4.06E-05
35	GO:1901671: positive regulation of superoxide dismutase activity	6.04E-05
36	GO:0000304: response to singlet oxygen	1.95E-04
37	GO:0045893: positive regulation of transcription, DNA-templated	3.26E-04
38	GO:0006782: protoporphyrinogen IX biosynthetic process	4.04E-04
39	GO:0045037: protein import into chloroplast stroma	4.04E-04
40	GO:0000373: Group II intron splicing	4.04E-04
41	GO:0015995: chlorophyll biosynthetic process	6.49E-04
42	GO:0010468: regulation of gene expression	6.86E-04
43	GO:0006591: ornithine metabolic process	1.47E-03
44	GO:0009959: negative gravitropism	1.47E-03
45	GO:0006788: heme oxidation	1.47E-03
46	GO:0006423: cysteinyl-tRNA aminoacylation	1.47E-03
47	GO:0006429: leucyl-tRNA aminoacylation	1.47E-03
48	GO:0033014: tetrapyrrole biosynthetic process	1.48E-03
49	GO:0035304: regulation of protein dephosphorylation	2.19E-03
50	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.53E-03
51	GO:0009409: response to cold	3.13E-03
52	GO:0009407: toxin catabolic process	3.20E-03
53	GO:0010380: regulation of chlorophyll biosynthetic process	3.30E-03
54	GO:0019464: glycine decarboxylation via glycine cleavage system	3.30E-03
55	GO:0030308: negative regulation of cell growth	3.30E-03
56	GO:0019481: L-alanine catabolic process, by transamination	3.30E-03
57	GO:0010236: plastoquinone biosynthetic process	3.30E-03
58	GO:0042372: phylloquinone biosynthetic process	3.30E-03
59	GO:0010024: phytochromobilin biosynthetic process	3.30E-03
60	GO:0009642: response to light intensity	3.30E-03
61	GO:0006098: pentose-phosphate shunt	3.90E-03
62	GO:0006546: glycine catabolic process	4.81E-03
63	GO:0006733: oxidoreduction coenzyme metabolic process	5.61E-03
64	GO:0010038: response to metal ion	5.61E-03
65	GO:0051085: chaperone mediated protein folding requiring cofactor	5.61E-03
66	GO:0010731: protein glutathionylation	5.61E-03
67	GO:0016075: rRNA catabolic process	5.61E-03
68	GO:0043067: regulation of programmed cell death	5.61E-03
69	GO:0009231: riboflavin biosynthetic process	5.61E-03
70	GO:0009247: glycolipid biosynthetic process	5.61E-03
71	GO:0019760: glucosinolate metabolic process	5.61E-03
72	GO:0006450: regulation of translational fidelity	5.61E-03
73	GO:0009073: aromatic amino acid family biosynthetic process	5.76E-03
74	GO:0006184: obsolete GTP catabolic process	6.30E-03
75	GO:0019344: cysteine biosynthetic process	6.36E-03
76	GO:0051607: defense response to virus	6.77E-03
77	GO:0008299: isoprenoid biosynthetic process	7.88E-03
78	GO:0042026: protein refolding	8.32E-03
79	GO:0071704: organic substance metabolic process	8.32E-03
80	GO:0006165: nucleoside diphosphate phosphorylation	8.32E-03
81	GO:0006228: UTP biosynthetic process	8.32E-03
82	GO:0051205: protein insertion into membrane	8.32E-03
83	GO:0009117: nucleotide metabolic process	8.32E-03
84	GO:0006353: DNA-templated transcription, termination	8.32E-03
85	GO:0019375: galactolipid biosynthetic process	8.32E-03
86	GO:0006183: GTP biosynthetic process	8.32E-03
87	GO:0006241: CTP biosynthetic process	8.32E-03
88	GO:0030154: cell differentiation	1.04E-02
89	GO:0019684: photosynthesis, light reaction	1.04E-02
90	GO:0009772: photosynthetic electron transport in photosystem II	1.14E-02
91	GO:0019748: secondary metabolic process	1.14E-02
92	GO:0009308: amine metabolic process	1.14E-02
93	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.18E-02
94	GO:0044267: cellular protein metabolic process	1.18E-02
95	GO:0010267: production of ta-siRNAs involved in RNA interference	1.18E-02
96	GO:0009627: systemic acquired resistance	1.33E-02
97	GO:0000105: histidine biosynthetic process	1.48E-02
98	GO:0006749: glutathione metabolic process	1.48E-02
99	GO:0031347: regulation of defense response	1.48E-02
100	GO:0048229: gametophyte development	1.48E-02
101	GO:0009773: photosynthetic electron transport in photosystem I	1.49E-02
102	GO:0010206: photosystem II repair	1.85E-02
103	GO:0034660: ncRNA metabolic process	1.85E-02
104	GO:0019538: protein metabolic process	1.85E-02
105	GO:0009106: lipoate metabolic process	1.85E-02
106	GO:0032880: regulation of protein localization	1.85E-02
107	GO:0006766: vitamin metabolic process	1.85E-02
108	GO:0009411: response to UV	1.85E-02
109	GO:0009108: coenzyme biosynthetic process	1.85E-02
110	GO:0010583: response to cyclopentenone	1.85E-02
111	GO:0006189: 'de novo' IMP biosynthetic process	1.85E-02
112	GO:0006200: obsolete ATP catabolic process	1.94E-02
113	GO:0051604: protein maturation	2.25E-02
114	GO:0045087: innate immune response	2.68E-02
115	GO:0001666: response to hypoxia	2.68E-02
116	GO:0009585: red, far-red light phototransduction	2.68E-02
117	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.68E-02
118	GO:0009735: response to cytokinin	2.88E-02
119	GO:0006396: RNA processing	3.12E-02
120	GO:0000302: response to reactive oxygen species	3.14E-02
121	GO:0019252: starch biosynthetic process	4.03E-02
122	GO:0016226: iron-sulfur cluster assembly	4.18E-02
123	GO:0000023: maltose metabolic process	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
6	GO:0042586: peptide deformylase activity	0.00E+00
7	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
8	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
9	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
10	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
11	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
12	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
13	GO:0003919: FMN adenylyltransferase activity	0.00E+00
14	GO:0005048: signal sequence binding	0.00E+00
15	GO:0004853: uroporphyrinogen decarboxylase activity	6.04E-05
16	GO:0000774: adenyl-nucleotide exchange factor activity	1.95E-04
17	GO:0051082: unfolded protein binding	3.04E-04
18	GO:0008565: protein transporter activity	3.26E-04
19	GO:0004659: prenyltransferase activity	4.04E-04
20	GO:0004362: glutathione-disulfide reductase activity	1.47E-03
21	GO:0004585: ornithine carbamoyltransferase activity	1.47E-03
22	GO:0008146: sulfotransferase activity	1.47E-03
23	GO:0004817: cysteine-tRNA ligase activity	1.47E-03
24	GO:0004823: leucine-tRNA ligase activity	1.47E-03
25	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.47E-03
26	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.47E-03
27	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.48E-03
28	GO:0004525: ribonuclease III activity	1.48E-03
29	GO:0008312: 7S RNA binding	1.98E-03
30	GO:0051087: chaperone binding	1.98E-03
31	GO:0004252: serine-type endopeptidase activity	2.40E-03
32	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	3.30E-03
33	GO:0047134: protein-disulfide reductase activity	3.30E-03
34	GO:0004462: lactoylglutathione lyase activity	3.30E-03
35	GO:0004392: heme oxygenase (decyclizing) activity	3.30E-03
36	GO:0005496: steroid binding	3.30E-03
37	GO:0051920: peroxiredoxin activity	3.30E-03
38	GO:0016630: protochlorophyllide reductase activity	3.30E-03
39	GO:0046914: transition metal ion binding	3.97E-03
40	GO:0016743: carboxyl- or carbamoyltransferase activity	5.61E-03
41	GO:0003959: NADPH dehydrogenase activity	5.61E-03
42	GO:0070569: uridylyltransferase activity	8.32E-03
43	GO:0004765: shikimate kinase activity	8.32E-03
44	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	8.32E-03
45	GO:0004550: nucleoside diphosphate kinase activity	8.32E-03
46	GO:0016209: antioxidant activity	8.32E-03
47	GO:0003913: DNA photolyase activity	8.32E-03
48	GO:0016831: carboxy-lyase activity	9.09E-03
49	GO:0016868: intramolecular transferase activity, phosphotransferases	1.14E-02
50	GO:0016987: sigma factor activity	1.14E-02
51	GO:0005525: GTP binding	1.14E-02
52	GO:0005507: copper ion binding	1.39E-02
53	GO:0008173: RNA methyltransferase activity	1.48E-02
54	GO:0016817: hydrolase activity, acting on acid anhydrides	1.48E-02
55	GO:0031072: heat shock protein binding	1.66E-02
56	GO:0004222: metalloendopeptidase activity	2.03E-02
57	GO:0043022: ribosome binding	2.25E-02
58	GO:0008266: poly(U) RNA binding	2.68E-02
59	GO:0003723: RNA binding	2.84E-02
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.14E-02
61	GO:0000287: magnesium ion binding	3.47E-02
62	GO:0005524: ATP binding	3.64E-02
63	GO:0016887: ATPase activity	3.65E-02
64	GO:0003690: double-stranded DNA binding	4.13E-02
65	GO:0003924: GTPase activity	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
4	GO:0009507: chloroplast	5.07E-31
5	GO:0009941: chloroplast envelope	1.37E-16
6	GO:0009570: chloroplast stroma	2.03E-15
7	GO:0009535: chloroplast thylakoid membrane	3.83E-12
8	GO:0009579: thylakoid	3.77E-10
9	GO:0009532: plastid stroma	3.34E-06
10	GO:0009706: chloroplast inner membrane	4.65E-04
11	GO:0009534: chloroplast thylakoid	6.49E-04
12	GO:0009840: chloroplastic endopeptidase Clp complex	6.86E-04
13	GO:0010319: stromule	1.40E-03
14	GO:0009526: plastid envelope	1.47E-03
15	GO:0005960: glycine cleavage complex	1.47E-03
16	GO:0044445: cytosolic part	1.47E-03
17	GO:0080085: signal recognition particle, chloroplast targeting	1.47E-03
18	GO:0048500: signal recognition particle	1.48E-03
19	GO:0009533: chloroplast stromal thylakoid	3.30E-03
20	GO:0009536: plastid	4.00E-03
21	GO:0005759: mitochondrial matrix	4.16E-03
22	GO:0009295: nucleoid	4.81E-03
23	GO:0042651: thylakoid membrane	6.77E-03
24	GO:0031977: thylakoid lumen	8.43E-03
25	GO:0048046: apoplast	1.18E-02
26	GO:0019898: extrinsic component of membrane	1.48E-02
27	GO:0019013: viral nucleocapsid	1.49E-02
28	GO:0009654: photosystem II oxygen evolving complex	1.85E-02