co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G002879

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090391: granum assembly	0.00E+00
2	GO:0043953: protein transport by the Tat complex	0.00E+00
3	GO:0009658: chloroplast organization	2.80E-06
4	GO:0045038: protein import into chloroplast thylakoid membrane	5.91E-06
5	GO:0010207: photosystem II assembly	1.13E-05
6	GO:0010027: thylakoid membrane organization	2.32E-05
7	GO:0009902: chloroplast relocation	2.73E-05
8	GO:0016226: iron-sulfur cluster assembly	6.63E-05
9	GO:0048481: plant ovule development	8.15E-05
10	GO:0000023: maltose metabolic process	8.15E-05
11	GO:0006433: prolyl-tRNA aminoacylation	1.15E-04
12	GO:0071722: detoxification of arsenic-containing substance	1.15E-04
13	GO:0006364: rRNA processing	1.17E-04
14	GO:0006655: phosphatidylglycerol biosynthetic process	1.78E-04
15	GO:0042793: transcription from plastid promoter	1.78E-04
16	GO:1901671: positive regulation of superoxide dismutase activity	2.87E-04
17	GO:0006432: phenylalanyl-tRNA aminoacylation	2.87E-04
18	GO:0010109: regulation of photosynthesis	2.87E-04
19	GO:0045893: positive regulation of transcription, DNA-templated	2.91E-04
20	GO:0019252: starch biosynthetic process	4.13E-04
21	GO:0035304: regulation of protein dephosphorylation	4.18E-04
22	GO:0006733: oxidoreduction coenzyme metabolic process	4.96E-04
23	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.61E-04
24	GO:0006457: protein folding	5.82E-04
25	GO:0009117: nucleotide metabolic process	7.35E-04
26	GO:0045037: protein import into chloroplast stroma	7.35E-04
27	GO:0006353: DNA-templated transcription, termination	7.35E-04
28	GO:0009073: aromatic amino acid family biosynthetic process	8.99E-04
29	GO:0019344: cysteine biosynthetic process	9.74E-04
30	GO:0006569: tryptophan catabolic process	1.01E-03
31	GO:0019748: secondary metabolic process	1.01E-03
32	GO:0009306: protein secretion	1.30E-03
33	GO:0006749: glutathione metabolic process	1.30E-03
34	GO:0006418: tRNA aminoacylation for protein translation	1.48E-03
35	GO:0009108: coenzyme biosynthetic process	1.61E-03
36	GO:0034660: ncRNA metabolic process	1.61E-03
37	GO:0009106: lipoate metabolic process	1.61E-03
38	GO:0006766: vitamin metabolic process	1.61E-03
39	GO:0043039: tRNA aminoacylation	1.93E-03
40	GO:0006399: tRNA metabolic process	1.93E-03
41	GO:0010228: vegetative to reproductive phase transition of meristem	2.08E-03
42	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.27E-03
43	GO:0006200: obsolete ATP catabolic process	2.29E-03
44	GO:0009684: indoleacetic acid biosynthetic process	2.62E-03
45	GO:0009407: toxin catabolic process	2.62E-03
46	GO:0016556: mRNA modification	3.01E-03
47	GO:0006546: glycine catabolic process	3.43E-03
48	GO:0045036: protein targeting to chloroplast	3.86E-03
49	GO:0008033: tRNA processing	4.31E-03
50	GO:0051607: defense response to virus	4.31E-03
51	GO:0048316: seed development	4.31E-03
52	GO:0006636: unsaturated fatty acid biosynthetic process	4.77E-03
53	GO:0006098: pentose-phosphate shunt	5.13E-03
54	GO:0042545: cell wall modification	5.24E-03
55	GO:0030154: cell differentiation	5.74E-03
56	GO:0010267: production of ta-siRNAs involved in RNA interference	6.25E-03
57	GO:0035196: production of miRNAs involved in gene silencing by miRNA	6.25E-03
58	GO:0009773: photosynthetic electron transport in photosystem I	7.33E-03
59	GO:0009553: embryo sac development	7.88E-03
60	GO:0009695: jasmonic acid biosynthetic process	7.88E-03
61	GO:0006626: protein targeting to mitochondrion	1.03E-02
62	GO:0019761: glucosinolate biosynthetic process	1.35E-02
63	GO:0009793: embryo development ending in seed dormancy	1.58E-02
64	GO:0006414: translational elongation	1.87E-02
65	GO:0015995: chlorophyll biosynthetic process	2.11E-02
66	GO:0043085: positive regulation of catalytic activity	2.36E-02
67	GO:0009965: leaf morphogenesis	2.45E-02
68	GO:0006413: translational initiation	3.66E-02
69	GO:0009409: response to cold	4.00E-02
70	GO:0080167: response to karrikin	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0004362: glutathione-disulfide reductase activity	1.15E-04
4	GO:0004827: proline-tRNA ligase activity	1.15E-04
5	GO:0004826: phenylalanine-tRNA ligase activity	2.87E-04
6	GO:0000774: adenyl-nucleotide exchange factor activity	4.96E-04
7	GO:0070569: uridylyltransferase activity	7.35E-04
8	GO:0004765: shikimate kinase activity	7.35E-04
9	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	7.35E-04
10	GO:0004812: aminoacyl-tRNA ligase activity	1.67E-03
11	GO:0051087: chaperone binding	1.93E-03
12	GO:0008312: 7S RNA binding	1.93E-03
13	GO:0043022: ribosome binding	1.93E-03
14	GO:0000049: tRNA binding	2.62E-03
15	GO:0046914: transition metal ion binding	3.01E-03
16	GO:0016887: ATPase activity	3.78E-03
17	GO:0005524: ATP binding	4.09E-03
18	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	5.74E-03
19	GO:0051082: unfolded protein binding	6.09E-03
20	GO:0008565: protein transporter activity	7.88E-03
21	GO:0005525: GTP binding	9.38E-03
22	GO:0017111: nucleoside-triphosphatase activity	1.29E-02
23	GO:0008236: serine-type peptidase activity	1.29E-02
24	GO:0003746: translation elongation factor activity	1.50E-02
25	GO:0050661: NADP binding	1.95E-02
26	GO:0003924: GTPase activity	2.13E-02
27	GO:0042803: protein homodimerization activity	2.36E-02
28	GO:0005507: copper ion binding	3.21E-02
29	GO:0000166: nucleotide binding	3.40E-02
30	GO:0004252: serine-type endopeptidase activity	3.46E-02
31	GO:0016788: hydrolase activity, acting on ester bonds	3.66E-02
32	GO:0050660: flavin adenine dinucleotide binding	4.28E-02
33	GO:0003743: translation initiation factor activity	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.91E-09
2	GO:0009570: chloroplast stroma	1.27E-07
3	GO:0080085: signal recognition particle, chloroplast targeting	1.15E-04
4	GO:0009941: chloroplast envelope	6.01E-04
5	GO:0009840: chloroplastic endopeptidase Clp complex	1.01E-03
6	GO:0048500: signal recognition particle	1.61E-03
7	GO:0009532: plastid stroma	1.93E-03
8	GO:0009534: chloroplast thylakoid	1.97E-03
9	GO:0009579: thylakoid	4.10E-03
10	GO:0042651: thylakoid membrane	4.31E-03
11	GO:0005759: mitochondrial matrix	1.03E-02
12	GO:0009535: chloroplast thylakoid membrane	1.05E-02
13	GO:0005739: mitochondrion	1.77E-02
14	GO:0009536: plastid	2.92E-02
15	GO:0048046: apoplast	4.58E-02