co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G001661

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032543: mitochondrial translation	0.00E+00
2	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0043043: peptide biosynthetic process	0.00E+00
5	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0090391: granum assembly	0.00E+00
8	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
9	GO:0043953: protein transport by the Tat complex	0.00E+00
10	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
11	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.71E-12
12	GO:0009658: chloroplast organization	6.02E-12
13	GO:0010027: thylakoid membrane organization	3.87E-07
14	GO:0009902: chloroplast relocation	2.24E-06
15	GO:0045038: protein import into chloroplast thylakoid membrane	4.48E-06
16	GO:0006364: rRNA processing	1.20E-05
17	GO:0006779: porphyrin-containing compound biosynthetic process	1.62E-05
18	GO:0006418: tRNA aminoacylation for protein translation	2.13E-05
19	GO:0006655: phosphatidylglycerol biosynthetic process	3.43E-05
20	GO:0042793: transcription from plastid promoter	3.43E-05
21	GO:0032544: plastid translation	4.42E-05
22	GO:1901671: positive regulation of superoxide dismutase activity	4.42E-05
23	GO:0015995: chlorophyll biosynthetic process	4.90E-05
24	GO:0006457: protein folding	6.76E-05
25	GO:0010207: photosystem II assembly	1.25E-04
26	GO:0006571: tyrosine biosynthetic process	1.45E-04
27	GO:0006733: oxidoreduction coenzyme metabolic process	1.45E-04
28	GO:0035304: regulation of protein dephosphorylation	1.68E-04
29	GO:0010417: glucuronoxylan biosynthetic process	3.06E-04
30	GO:0009117: nucleotide metabolic process	3.06E-04
31	GO:0045037: protein import into chloroplast stroma	3.06E-04
32	GO:0006353: DNA-templated transcription, termination	3.06E-04
33	GO:0006546: glycine catabolic process	3.33E-04
34	GO:0045036: protein targeting to chloroplast	4.29E-04
35	GO:0006412: translation	5.01E-04
36	GO:0019748: secondary metabolic process	5.24E-04
37	GO:0006098: pentose-phosphate shunt	5.39E-04
38	GO:0019344: cysteine biosynthetic process	7.20E-04
39	GO:0045893: positive regulation of transcription, DNA-templated	1.03E-03
40	GO:0006766: vitamin metabolic process	1.14E-03
41	GO:0009108: coenzyme biosynthetic process	1.14E-03
42	GO:0033014: tetrapyrrole biosynthetic process	1.14E-03
43	GO:0019538: protein metabolic process	1.14E-03
44	GO:0009106: lipoate metabolic process	1.14E-03
45	GO:0006433: prolyl-tRNA aminoacylation	1.23E-03
46	GO:0006423: cysteinyl-tRNA aminoacylation	1.23E-03
47	GO:0071722: detoxification of arsenic-containing substance	1.23E-03
48	GO:0080141: regulation of jasmonic acid biosynthetic process	1.23E-03
49	GO:0006430: lysyl-tRNA aminoacylation	1.23E-03
50	GO:0051512: positive regulation of unidimensional cell growth	1.23E-03
51	GO:0006429: leucyl-tRNA aminoacylation	1.23E-03
52	GO:0010587: miRNA catabolic process	1.23E-03
53	GO:0009968: negative regulation of signal transduction	1.23E-03
54	GO:0006788: heme oxidation	1.23E-03
55	GO:0043157: response to cation stress	1.23E-03
56	GO:0006399: tRNA metabolic process	1.53E-03
57	GO:0009773: photosynthetic electron transport in photosystem I	1.58E-03
58	GO:0009695: jasmonic acid biosynthetic process	1.82E-03
59	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.98E-03
60	GO:0006432: phenylalanyl-tRNA aminoacylation	2.75E-03
61	GO:0010109: regulation of photosynthesis	2.75E-03
62	GO:0042372: phylloquinone biosynthetic process	2.75E-03
63	GO:0010024: phytochromobilin biosynthetic process	2.75E-03
64	GO:0010380: regulation of chlorophyll biosynthetic process	2.75E-03
65	GO:0044272: sulfur compound biosynthetic process	2.75E-03
66	GO:0019464: glycine decarboxylation via glycine cleavage system	2.75E-03
67	GO:0016556: mRNA modification	3.04E-03
68	GO:0030497: fatty acid elongation	4.70E-03
69	GO:0009247: glycolipid biosynthetic process	4.70E-03
70	GO:0000304: response to singlet oxygen	4.70E-03
71	GO:0006450: regulation of translational fidelity	4.70E-03
72	GO:0006431: methionyl-tRNA aminoacylation	4.70E-03
73	GO:0043067: regulation of programmed cell death	4.70E-03
74	GO:0031408: oxylipin biosynthetic process	5.20E-03
75	GO:0016226: iron-sulfur cluster assembly	6.03E-03
76	GO:0019375: galactolipid biosynthetic process	6.93E-03
77	GO:0006183: GTP biosynthetic process	6.93E-03
78	GO:0006401: RNA catabolic process	6.93E-03
79	GO:0009098: leucine biosynthetic process	6.93E-03
80	GO:0006241: CTP biosynthetic process	6.93E-03
81	GO:0030259: lipid glycosylation	6.93E-03
82	GO:0006782: protoporphyrinogen IX biosynthetic process	6.93E-03
83	GO:0006165: nucleoside diphosphate phosphorylation	6.93E-03
84	GO:0019216: regulation of lipid metabolic process	6.93E-03
85	GO:0006790: sulfur compound metabolic process	6.93E-03
86	GO:0006228: UTP biosynthetic process	6.93E-03
87	GO:0048481: plant ovule development	7.18E-03
88	GO:0019684: photosynthesis, light reaction	8.00E-03
89	GO:0030154: cell differentiation	8.00E-03
90	GO:0006414: translational elongation	9.13E-03
91	GO:0010468: regulation of gene expression	9.48E-03
92	GO:0070084: protein initiator methionine removal	9.48E-03
93	GO:0000096: sulfur amino acid metabolic process	9.48E-03
94	GO:0010072: primary shoot apical meristem specification	9.48E-03
95	GO:0006081: cellular aldehyde metabolic process	9.48E-03
96	GO:0006749: glutathione metabolic process	1.23E-02
97	GO:0031347: regulation of defense response	1.23E-02
98	GO:0009306: protein secretion	1.23E-02
99	GO:0048367: shoot system development	1.28E-02
100	GO:0009409: response to cold	1.28E-02
101	GO:0032880: regulation of protein localization	1.54E-02
102	GO:0009987: cellular process	1.54E-02
103	GO:0009411: response to UV	1.54E-02
104	GO:0006189: 'de novo' IMP biosynthetic process	1.54E-02
105	GO:0010206: photosystem II repair	1.54E-02
106	GO:0034660: ncRNA metabolic process	1.54E-02
107	GO:0010205: photoinhibition	1.54E-02
108	GO:0006508: proteolysis	1.65E-02
109	GO:0010099: regulation of photomorphogenesis	1.87E-02
110	GO:0043039: tRNA aminoacylation	1.87E-02
111	GO:0009082: branched-chain amino acid biosynthetic process	1.87E-02
112	GO:0009628: response to abiotic stimulus	1.87E-02
113	GO:0009735: response to cytokinin	2.22E-02
114	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.23E-02
115	GO:0045087: innate immune response	2.23E-02
116	GO:0009072: aromatic amino acid family metabolic process	2.23E-02
117	GO:0010154: fruit development	2.23E-02
118	GO:0009585: red, far-red light phototransduction	2.23E-02
119	GO:0009073: aromatic amino acid family biosynthetic process	2.41E-02
120	GO:0016117: carotenoid biosynthetic process	2.60E-02
121	GO:0009834: plant-type secondary cell wall biogenesis	2.61E-02
122	GO:0009407: toxin catabolic process	2.61E-02
123	GO:0010051: xylem and phloem pattern formation	2.61E-02
124	GO:0000302: response to reactive oxygen species	2.61E-02
125	GO:0009790: embryo development	2.80E-02
126	GO:0006354: DNA-templated transcription, elongation	3.01E-02
127	GO:0045492: xylan biosynthetic process	3.43E-02
128	GO:0000023: maltose metabolic process	3.68E-02
129	GO:0009612: response to mechanical stimulus	3.87E-02
130	GO:0046854: phosphatidylinositol phosphorylation	3.87E-02
131	GO:0019722: calcium-mediated signaling	3.87E-02
132	GO:0042742: defense response to bacterium	3.90E-02
133	GO:0008033: tRNA processing	4.33E-02
134	GO:0051607: defense response to virus	4.33E-02
135	GO:0048316: seed development	4.33E-02
136	GO:0006633: fatty acid biosynthetic process	4.39E-02
137	GO:0005982: starch metabolic process	4.81E-02
138	GO:0006636: unsaturated fatty acid biosynthetic process	4.81E-02
139	GO:0010197: polar nucleus fusion	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
2	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
3	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
4	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
5	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
6	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
7	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
8	GO:0005048: signal sequence binding	0.00E+00
9	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
10	GO:0046408: chlorophyll synthetase activity	0.00E+00
11	GO:0042285: xylosyltransferase activity	0.00E+00
12	GO:0004812: aminoacyl-tRNA ligase activity	3.02E-05
13	GO:0004252: serine-type endopeptidase activity	4.23E-05
14	GO:0008977: prephenate dehydrogenase (NAD+) activity	4.42E-05
15	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	4.42E-05
16	GO:0004665: prephenate dehydrogenase (NADP+) activity	4.42E-05
17	GO:0051087: chaperone binding	8.17E-05
18	GO:0000774: adenyl-nucleotide exchange factor activity	1.45E-04
19	GO:0016209: antioxidant activity	3.06E-04
20	GO:0019843: rRNA binding	3.52E-04
21	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.14E-03
22	GO:0004824: lysine-tRNA ligase activity	1.23E-03
23	GO:0004827: proline-tRNA ligase activity	1.23E-03
24	GO:0003989: acetyl-CoA carboxylase activity	1.23E-03
25	GO:0016851: magnesium chelatase activity	1.23E-03
26	GO:0004823: leucine-tRNA ligase activity	1.23E-03
27	GO:0003862: 3-isopropylmalate dehydrogenase activity	1.23E-03
28	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.23E-03
29	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.23E-03
30	GO:0035250: UDP-galactosyltransferase activity	1.23E-03
31	GO:0004362: glutathione-disulfide reductase activity	1.23E-03
32	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.23E-03
33	GO:0031177: phosphopantetheine binding	1.23E-03
34	GO:0008194: UDP-glycosyltransferase activity	1.23E-03
35	GO:0004817: cysteine-tRNA ligase activity	1.23E-03
36	GO:0008312: 7S RNA binding	1.53E-03
37	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.75E-03
38	GO:0004853: uroporphyrinogen decarboxylase activity	2.75E-03
39	GO:0004075: biotin carboxylase activity	2.75E-03
40	GO:0045485: omega-6 fatty acid desaturase activity	2.75E-03
41	GO:0004392: heme oxygenase (decyclizing) activity	2.75E-03
42	GO:0051920: peroxiredoxin activity	2.75E-03
43	GO:0004826: phenylalanine-tRNA ligase activity	2.75E-03
44	GO:0004462: lactoylglutathione lyase activity	2.75E-03
45	GO:0019204: obsolete nucleotide phosphatase activity	2.75E-03
46	GO:0046914: transition metal ion binding	3.04E-03
47	GO:0003735: structural constituent of ribosome	3.40E-03
48	GO:0080116: glucuronoxylan glucuronosyltransferase activity	4.70E-03
49	GO:0004825: methionine-tRNA ligase activity	4.70E-03
50	GO:0032549: ribonucleoside binding	4.70E-03
51	GO:0015020: glucuronosyltransferase activity	4.70E-03
52	GO:0003746: translation elongation factor activity	6.03E-03
53	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	6.93E-03
54	GO:0004765: shikimate kinase activity	6.93E-03
55	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	6.93E-03
56	GO:0004550: nucleoside diphosphate kinase activity	6.93E-03
57	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	6.93E-03
58	GO:0070569: uridylyltransferase activity	6.93E-03
59	GO:0015018: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	6.93E-03
60	GO:0004659: prenyltransferase activity	6.93E-03
61	GO:0016987: sigma factor activity	9.48E-03
62	GO:0070006: metalloaminopeptidase activity	9.48E-03
63	GO:0008173: RNA methyltransferase activity	1.23E-02
64	GO:0008235: metalloexopeptidase activity	1.23E-02
65	GO:0031072: heat shock protein binding	1.28E-02
66	GO:0051082: unfolded protein binding	1.31E-02
67	GO:0008233: peptidase activity	1.38E-02
68	GO:0043022: ribosome binding	1.87E-02
69	GO:0042578: phosphoric ester hydrolase activity	2.23E-02
70	GO:0008266: poly(U) RNA binding	2.23E-02
71	GO:0000049: tRNA binding	2.61E-02
72	GO:0004177: aminopeptidase activity	2.61E-02
73	GO:0048037: cofactor binding	3.43E-02
74	GO:0043531: ADP binding	3.43E-02
75	GO:0003690: double-stranded DNA binding	3.43E-02
76	GO:0005525: GTP binding	4.23E-02
77	GO:0005524: ATP binding	4.27E-02
78	GO:0004527: exonuclease activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0080085: signal recognition particle, chloroplast targeting	0.00E+00
3	GO:0009507: chloroplast	1.05E-36
4	GO:0009570: chloroplast stroma	6.54E-32
5	GO:0009941: chloroplast envelope	2.62E-22
6	GO:0009532: plastid stroma	2.45E-08
7	GO:0009579: thylakoid	4.36E-08
8	GO:0009840: chloroplastic endopeptidase Clp complex	1.03E-07
9	GO:0009535: chloroplast thylakoid membrane	5.75E-07
10	GO:0009534: chloroplast thylakoid	4.90E-05
11	GO:0005840: ribosome	6.34E-05
12	GO:0048500: signal recognition particle	1.14E-03
13	GO:0000311: plastid large ribosomal subunit	1.23E-03
14	GO:0005960: glycine cleavage complex	1.23E-03
15	GO:0030529: intracellular ribonucleoprotein complex	1.78E-03
16	GO:0009536: plastid	2.12E-03
17	GO:0009706: chloroplast inner membrane	2.34E-03
18	GO:0009533: chloroplast stromal thylakoid	2.75E-03
19	GO:0009295: nucleoid	3.70E-03
20	GO:0010319: stromule	5.51E-03
21	GO:0005759: mitochondrial matrix	1.87E-02
22	GO:0005737: cytoplasm	2.34E-02
23	GO:0015934: large ribosomal subunit	3.01E-02
24	GO:0005739: mitochondrion	3.12E-02
25	GO:0042651: thylakoid membrane	4.33E-02
26	GO:0048046: apoplast	4.33E-02