co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G000923

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
2	GO:0042276: error-prone translesion synthesis	0.00E+00
3	GO:0006268: DNA unwinding involved in DNA replication	0.00E+00
4	GO:0032465: regulation of cytokinesis	0.00E+00
5	GO:0010425: DNA methylation on cytosine within a CNG sequence	0.00E+00
6	GO:0006260: DNA replication	1.70E-09
7	GO:0007049: cell cycle	7.66E-08
8	GO:0016572: histone phosphorylation	2.16E-07
9	GO:0010069: zygote asymmetric cytokinesis in embryo sac	8.75E-06
10	GO:0043987: histone H3-S10 phosphorylation	8.75E-06
11	GO:0045814: negative regulation of gene expression, epigenetic	8.75E-06
12	GO:0051567: histone H3-K9 methylation	9.09E-06
13	GO:0006306: DNA methylation	1.25E-05
14	GO:0006342: chromatin silencing	1.58E-05
15	GO:0006275: regulation of DNA replication	3.79E-05
16	GO:0006281: DNA repair	5.28E-05
17	GO:0090116: C-5 methylation of cytosine	7.06E-05
18	GO:0051301: cell division	2.76E-04
19	GO:1990426: mitotic recombination-dependent replication fork processing	4.99E-04
20	GO:0048574: long-day photoperiodism, flowering	4.99E-04
21	GO:0000917: barrier septum assembly	4.99E-04
22	GO:0007059: chromosome segregation	4.99E-04
23	GO:0006270: DNA replication initiation	6.19E-04
24	GO:0006259: DNA metabolic process	8.42E-04
25	GO:0009909: regulation of flower development	9.02E-04
26	GO:0019915: lipid storage	1.03E-03
27	GO:0009956: radial pattern formation	1.16E-03
28	GO:0009755: hormone-mediated signaling pathway	1.16E-03
29	GO:0001522: pseudouridine synthesis	1.23E-03
30	GO:0010389: regulation of G2/M transition of mitotic cell cycle	1.23E-03
31	GO:0032508: DNA duplex unwinding	1.23E-03
32	GO:0009294: DNA mediated transformation	1.68E-03
33	GO:0010162: seed dormancy process	1.68E-03
34	GO:0050826: response to freezing	1.93E-03
35	GO:0006471: protein ADP-ribosylation	1.94E-03
36	GO:0010638: positive regulation of organelle organization	1.94E-03
37	GO:0009957: epidermal cell fate specification	1.94E-03
38	GO:0048235: pollen sperm cell differentiation	1.94E-03
39	GO:0022904: respiratory electron transport chain	1.94E-03
40	GO:0006310: DNA recombination	2.47E-03
41	GO:0007018: microtubule-based movement	2.47E-03
42	GO:0009966: regulation of signal transduction	2.47E-03
43	GO:0008356: asymmetric cell division	2.81E-03
44	GO:0032147: activation of protein kinase activity	2.81E-03
45	GO:0010182: sugar mediated signaling pathway	3.11E-03
46	GO:0006265: DNA topological change	3.85E-03
47	GO:0010082: regulation of root meristem growth	3.85E-03
48	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	3.85E-03
49	GO:0033044: regulation of chromosome organization	3.85E-03
50	GO:0060236: regulation of mitotic spindle organization	3.85E-03
51	GO:0032875: regulation of DNA endoreduplication	3.85E-03
52	GO:0009845: seed germination	4.25E-03
53	GO:0006396: RNA processing	4.33E-03
54	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	4.67E-03
55	GO:0010050: vegetative phase change	4.98E-03
56	GO:0007267: cell-cell signaling	4.98E-03
57	GO:0010087: phloem or xylem histogenesis	4.98E-03
58	GO:0000226: microtubule cytoskeleton organization	5.56E-03
59	GO:0006084: acetyl-CoA metabolic process	6.20E-03
60	GO:0055072: iron ion homeostasis	6.20E-03
61	GO:0009934: regulation of meristem structural organization	6.20E-03
62	GO:0009086: methionine biosynthetic process	7.09E-03
63	GO:0010073: meristem maintenance	7.53E-03
64	GO:0010074: maintenance of meristem identity	7.53E-03
65	GO:0051726: regulation of cell cycle	7.64E-03
66	GO:0090305: nucleic acid phosphodiester bond hydrolysis	8.93E-03
67	GO:0006302: double-strand break repair	8.93E-03
68	GO:0000911: cytokinesis by cell plate formation	9.43E-03
69	GO:0006338: chromatin remodeling	1.04E-02
70	GO:0042127: regulation of cell proliferation	1.04E-02
71	GO:0009451: RNA modification	1.04E-02
72	GO:0009640: photomorphogenesis	1.07E-02
73	GO:0016567: protein ubiquitination	1.15E-02
74	GO:0048453: sepal formation	1.20E-02
75	GO:0010048: vernalization response	1.20E-02
76	GO:0006284: base-excision repair	1.20E-02
77	GO:0006312: mitotic recombination	1.20E-02
78	GO:0009616: virus induced gene silencing	1.20E-02
79	GO:0006974: cellular response to DNA damage stimulus	1.37E-02
80	GO:0048451: petal formation	1.37E-02
81	GO:0016571: histone methylation	1.54E-02
82	GO:0009165: nucleotide biosynthetic process	1.54E-02
83	GO:0010332: response to gamma radiation	1.54E-02
84	GO:0031048: chromatin silencing by small RNA	1.72E-02
85	GO:0048316: seed development	1.72E-02
86	GO:0006406: mRNA export from nucleus	1.72E-02
87	GO:0006289: nucleotide-excision repair	1.72E-02
88	GO:0009607: response to biotic stimulus	1.72E-02
89	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.91E-02
90	GO:0010014: meristem initiation	1.91E-02
91	GO:0007131: reciprocal meiotic recombination	1.91E-02
92	GO:0010197: polar nucleus fusion	1.91E-02
93	GO:0009855: determination of bilateral symmetry	1.91E-02
94	GO:0006952: defense response	2.25E-02
95	GO:0000724: double-strand break repair via homologous recombination	2.31E-02
96	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.53E-02
97	GO:0008219: cell death	2.53E-02
98	GO:0044267: cellular protein metabolic process	2.53E-02
99	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.53E-02
100	GO:0010267: production of ta-siRNAs involved in RNA interference	2.53E-02
101	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.74E-02
102	GO:0010090: trichome morphogenesis	2.97E-02
103	GO:0010224: response to UV-B	2.97E-02
104	GO:0009793: embryo development ending in seed dormancy	3.11E-02
105	GO:0009553: embryo sac development	3.20E-02
106	GO:0006346: methylation-dependent chromatin silencing	3.20E-02
107	GO:0000278: mitotic cell cycle	3.20E-02
108	GO:0042254: ribosome biogenesis	3.68E-02
109	GO:0031047: gene silencing by RNA	3.93E-02
110	GO:0009933: meristem structural organization	4.18E-02
111	GO:0001510: RNA methylation	4.44E-02
112	GO:0009560: embryo sac egg cell differentiation	4.44E-02
113	GO:0006397: mRNA processing	4.98E-02
114	GO:0016579: protein deubiquitination	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0030337: DNA polymerase processivity factor activity	0.00E+00
2	GO:0008409: 5'-3' exonuclease activity	0.00E+00
3	GO:0035175: histone kinase activity (H3-S10 specific)	8.75E-06
4	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	7.06E-05
5	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.99E-04
6	GO:0017108: 5'-flap endonuclease activity	4.99E-04
7	GO:0000150: recombinase activity	4.99E-04
8	GO:0003916: DNA topoisomerase activity	4.99E-04
9	GO:0008017: microtubule binding	7.90E-04
10	GO:0003678: DNA helicase activity	8.42E-04
11	GO:0003684: damaged DNA binding	8.42E-04
12	GO:0008569: ATP-dependent microtubule motor activity, minus-end-directed	1.16E-03
13	GO:0070628: proteasome binding	1.94E-03
14	GO:0003777: microtubule motor activity	2.47E-03
15	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.81E-03
16	GO:0030515: snoRNA binding	2.81E-03
17	GO:0003843: 1,3-beta-D-glucan synthase activity	3.85E-03
18	GO:0008536: Ran GTPase binding	4.98E-03
19	GO:0003950: NAD+ ADP-ribosyltransferase activity	6.20E-03
20	GO:0043130: ubiquitin binding	7.53E-03
21	GO:0008094: DNA-dependent ATPase activity	7.53E-03
22	GO:0009982: pseudouridine synthase activity	1.04E-02
23	GO:0004518: nuclease activity	1.20E-02
24	GO:0003697: single-stranded DNA binding	1.37E-02
25	GO:0003690: double-stranded DNA binding	1.37E-02
26	GO:0003677: DNA binding	1.37E-02
27	GO:0004519: endonuclease activity	1.54E-02
28	GO:0004527: exonuclease activity	1.91E-02
29	GO:0019901: protein kinase binding	2.11E-02
30	GO:0016651: oxidoreductase activity, acting on NAD(P)H	2.11E-02
31	GO:0000166: nucleotide binding	2.16E-02
32	GO:0005200: structural constituent of cytoskeleton	2.74E-02
33	GO:0003676: nucleic acid binding	3.05E-02
34	GO:0008565: protein transporter activity	3.20E-02
35	GO:0051082: unfolded protein binding	4.48E-02
36	GO:0008168: methyltransferase activity	4.93E-02
37	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
2	GO:0000812: Swr1 complex	0.00E+00
3	GO:0043626: PCNA complex	0.00E+00
4	GO:0005819: spindle	3.21E-04
5	GO:0072588: box H/ACA RNP complex	4.99E-04
6	GO:0000347: THO complex	4.99E-04
7	GO:0035267: NuA4 histone acetyltransferase complex	4.99E-04
8	GO:0005634: nucleus	5.27E-04
9	GO:0042555: MCM complex	5.32E-04
10	GO:0005730: nucleolus	9.45E-04
11	GO:0005875: microtubule associated complex	9.52E-04
12	GO:0005874: microtubule	1.55E-03
13	GO:0000775: chromosome, centromeric region	1.94E-03
14	GO:0000808: origin recognition complex	1.94E-03
15	GO:0005871: kinesin complex	2.32E-03
16	GO:0019013: viral nucleocapsid	3.11E-03
17	GO:0000148: 1,3-beta-D-glucan synthase complex	3.85E-03
18	GO:0031011: Ino80 complex	4.98E-03
19	GO:0015030: Cajal body	6.20E-03
20	GO:0016272: prefoldin complex	7.53E-03
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	7.53E-03
22	GO:0016604: nuclear body	7.53E-03
23	GO:0005743: mitochondrial inner membrane	1.69E-02
24	GO:0005643: nuclear pore	1.91E-02
25	GO:0005654: nucleoplasm	2.53E-02
26	GO:0031966: mitochondrial membrane	2.53E-02
27	GO:0005635: nuclear envelope	3.68E-02