co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G000256

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048564: photosystem I assembly	0.00E+00
2	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
3	GO:0043953: protein transport by the Tat complex	0.00E+00
4	GO:0010337: regulation of salicylic acid metabolic process	0.00E+00
5	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
6	GO:0032543: mitochondrial translation	0.00E+00
7	GO:0046506: sulfolipid biosynthetic process	0.00E+00
8	GO:1901259: chloroplast rRNA processing	0.00E+00
9	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
10	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
11	GO:0042780: tRNA 3'-end processing	0.00E+00
12	GO:1900865: chloroplast RNA modification	0.00E+00
13	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
14	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
15	GO:0043686: co-translational protein modification	0.00E+00
16	GO:0043043: peptide biosynthetic process	0.00E+00
17	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
18	GO:0090391: granum assembly	0.00E+00
19	GO:0009658: chloroplast organization	4.66E-17
20	GO:0006364: rRNA processing	8.56E-11
21	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.38E-10
22	GO:0006399: tRNA metabolic process	6.60E-10
23	GO:0010027: thylakoid membrane organization	9.69E-10
24	GO:0009306: protein secretion	6.28E-09
25	GO:0045036: protein targeting to chloroplast	5.34E-08
26	GO:0006457: protein folding	3.28E-07
27	GO:0010207: photosystem II assembly	4.32E-07
28	GO:0006779: porphyrin-containing compound biosynthetic process	1.22E-06
29	GO:0006655: phosphatidylglycerol biosynthetic process	3.30E-06
30	GO:0010103: stomatal complex morphogenesis	2.07E-05
31	GO:1901671: positive regulation of superoxide dismutase activity	7.07E-05
32	GO:0042793: transcription from plastid promoter	7.40E-05
33	GO:0009902: chloroplast relocation	9.26E-05
34	GO:0015995: chlorophyll biosynthetic process	1.33E-04
35	GO:0000304: response to singlet oxygen	2.26E-04
36	GO:0016556: mRNA modification	4.33E-04
37	GO:0045893: positive regulation of transcription, DNA-templated	4.39E-04
38	GO:0006782: protoporphyrinogen IX biosynthetic process	4.65E-04
39	GO:0045037: protein import into chloroplast stroma	4.65E-04
40	GO:0006353: DNA-templated transcription, termination	4.65E-04
41	GO:0045038: protein import into chloroplast thylakoid membrane	4.65E-04
42	GO:0006184: obsolete GTP catabolic process	5.38E-04
43	GO:0010468: regulation of gene expression	7.86E-04
44	GO:0006788: heme oxidation	1.60E-03
45	GO:0006429: leucyl-tRNA aminoacylation	1.60E-03
46	GO:0006591: ornithine metabolic process	1.60E-03
47	GO:0009959: negative gravitropism	1.60E-03
48	GO:0010190: cytochrome b6f complex assembly	1.60E-03
49	GO:0019538: protein metabolic process	1.68E-03
50	GO:0033014: tetrapyrrole biosynthetic process	1.68E-03
51	GO:0016226: iron-sulfur cluster assembly	1.91E-03
52	GO:0000023: maltose metabolic process	2.34E-03
53	GO:0035304: regulation of protein dephosphorylation	2.58E-03
54	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.89E-03
55	GO:0019252: starch biosynthetic process	3.27E-03
56	GO:0010380: regulation of chlorophyll biosynthetic process	3.62E-03
57	GO:0019464: glycine decarboxylation via glycine cleavage system	3.62E-03
58	GO:0030308: negative regulation of cell growth	3.62E-03
59	GO:0019481: L-alanine catabolic process, by transamination	3.62E-03
60	GO:0010236: plastoquinone biosynthetic process	3.62E-03
61	GO:0043255: regulation of carbohydrate biosynthetic process	3.62E-03
62	GO:0042372: phylloquinone biosynthetic process	3.62E-03
63	GO:0010024: phytochromobilin biosynthetic process	3.62E-03
64	GO:0009688: abscisic acid biosynthetic process	3.62E-03
65	GO:0009642: response to light intensity	3.62E-03
66	GO:0009407: toxin catabolic process	3.66E-03
67	GO:0009409: response to cold	4.44E-03
68	GO:0006098: pentose-phosphate shunt	4.92E-03
69	GO:0006200: obsolete ATP catabolic process	5.27E-03
70	GO:0006546: glycine catabolic process	5.48E-03
71	GO:0009735: response to cytokinin	6.14E-03
72	GO:0051085: chaperone mediated protein folding requiring cofactor	6.15E-03
73	GO:0010731: protein glutathionylation	6.15E-03
74	GO:0016075: rRNA catabolic process	6.15E-03
75	GO:0043067: regulation of programmed cell death	6.15E-03
76	GO:0009231: riboflavin biosynthetic process	6.15E-03
77	GO:0009247: glycolipid biosynthetic process	6.15E-03
78	GO:0019760: glucosinolate metabolic process	6.15E-03
79	GO:0006450: regulation of translational fidelity	6.15E-03
80	GO:0006733: oxidoreduction coenzyme metabolic process	6.15E-03
81	GO:0010038: response to metal ion	6.15E-03
82	GO:0009073: aromatic amino acid family biosynthetic process	6.82E-03
83	GO:0051607: defense response to virus	7.72E-03
84	GO:0006508: proteolysis	8.85E-03
85	GO:0008299: isoprenoid biosynthetic process	9.00E-03
86	GO:0006165: nucleoside diphosphate phosphorylation	9.13E-03
87	GO:0006228: UTP biosynthetic process	9.13E-03
88	GO:0010417: glucuronoxylan biosynthetic process	9.13E-03
89	GO:0010304: PSII associated light-harvesting complex II catabolic process	9.13E-03
90	GO:0009117: nucleotide metabolic process	9.13E-03
91	GO:0019375: galactolipid biosynthetic process	9.13E-03
92	GO:0006183: GTP biosynthetic process	9.13E-03
93	GO:0006241: CTP biosynthetic process	9.13E-03
94	GO:0000373: Group II intron splicing	9.13E-03
95	GO:0042026: protein refolding	9.13E-03
96	GO:0071704: organic substance metabolic process	9.13E-03
97	GO:0019684: photosynthesis, light reaction	1.19E-02
98	GO:0009772: photosynthetic electron transport in photosystem II	1.25E-02
99	GO:0019748: secondary metabolic process	1.25E-02
100	GO:0009308: amine metabolic process	1.25E-02
101	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.35E-02
102	GO:0044267: cellular protein metabolic process	1.35E-02
103	GO:0010267: production of ta-siRNAs involved in RNA interference	1.35E-02
104	GO:0006414: translational elongation	1.50E-02
105	GO:0009627: systemic acquired resistance	1.52E-02
106	GO:0000105: histidine biosynthetic process	1.62E-02
107	GO:0006749: glutathione metabolic process	1.62E-02
108	GO:0031347: regulation of defense response	1.62E-02
109	GO:0048229: gametophyte development	1.62E-02
110	GO:0034660: ncRNA metabolic process	2.03E-02
111	GO:0006801: superoxide metabolic process	2.03E-02
112	GO:0009106: lipoate metabolic process	2.03E-02
113	GO:0032880: regulation of protein localization	2.03E-02
114	GO:0006032: chitin catabolic process	2.03E-02
115	GO:0006766: vitamin metabolic process	2.03E-02
116	GO:0009411: response to UV	2.03E-02
117	GO:0009814: defense response, incompatible interaction	2.03E-02
118	GO:0009108: coenzyme biosynthetic process	2.03E-02
119	GO:0010583: response to cyclopentenone	2.03E-02
120	GO:0006189: 'de novo' IMP biosynthetic process	2.03E-02
121	GO:0010206: photosystem II repair	2.03E-02
122	GO:0010053: root epidermal cell differentiation	2.47E-02
123	GO:0051604: protein maturation	2.47E-02
124	GO:0001666: response to hypoxia	2.94E-02
125	GO:0009585: red, far-red light phototransduction	2.94E-02
126	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.94E-02
127	GO:0045087: innate immune response	2.94E-02
128	GO:0009809: lignin biosynthetic process	3.45E-02
129	GO:0000302: response to reactive oxygen species	3.45E-02
130	GO:0009834: plant-type secondary cell wall biogenesis	3.45E-02
131	GO:0006396: RNA processing	3.67E-02
132	GO:0019344: cysteine biosynthetic process	3.84E-02
133	GO:0009567: double fertilization forming a zygote and endosperm	3.98E-02
134	GO:0009416: response to light stimulus	4.51E-02
135	GO:0045492: xylan biosynthetic process	4.53E-02
136	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
4	GO:0042586: peptide deformylase activity	0.00E+00
5	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
6	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
7	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
8	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
9	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
10	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
11	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
12	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
13	GO:0003919: FMN adenylyltransferase activity	0.00E+00
14	GO:0005048: signal sequence binding	0.00E+00
15	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
16	GO:0008565: protein transporter activity	3.64E-05
17	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	7.07E-05
18	GO:0004853: uroporphyrinogen decarboxylase activity	7.07E-05
19	GO:0004252: serine-type endopeptidase activity	1.31E-04
20	GO:0000774: adenyl-nucleotide exchange factor activity	2.26E-04
21	GO:0051082: unfolded protein binding	4.22E-04
22	GO:0004585: ornithine carbamoyltransferase activity	1.60E-03
23	GO:0008146: sulfotransferase activity	1.60E-03
24	GO:0016851: magnesium chelatase activity	1.60E-03
25	GO:0004823: leucine-tRNA ligase activity	1.60E-03
26	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.60E-03
27	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.60E-03
28	GO:0004362: glutathione-disulfide reductase activity	1.60E-03
29	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.68E-03
30	GO:0004525: ribonuclease III activity	1.68E-03
31	GO:0008312: 7S RNA binding	2.24E-03
32	GO:0051087: chaperone binding	2.24E-03
33	GO:0005525: GTP binding	2.29E-03
34	GO:0031072: heat shock protein binding	2.96E-03
35	GO:0047134: protein-disulfide reductase activity	3.62E-03
36	GO:0004462: lactoylglutathione lyase activity	3.62E-03
37	GO:0004392: heme oxygenase (decyclizing) activity	3.62E-03
38	GO:0005496: steroid binding	3.62E-03
39	GO:0051920: peroxiredoxin activity	3.62E-03
40	GO:0016630: protochlorophyllide reductase activity	3.62E-03
41	GO:0046914: transition metal ion binding	4.54E-03
42	GO:0016743: carboxyl- or carbamoyltransferase activity	6.15E-03
43	GO:0015020: glucuronosyltransferase activity	6.15E-03
44	GO:0080116: glucuronoxylan glucuronosyltransferase activity	6.15E-03
45	GO:0003959: NADPH dehydrogenase activity	6.15E-03
46	GO:0005507: copper ion binding	6.90E-03
47	GO:0003924: GTPase activity	7.62E-03
48	GO:0070569: uridylyltransferase activity	9.13E-03
49	GO:0004659: prenyltransferase activity	9.13E-03
50	GO:0004765: shikimate kinase activity	9.13E-03
51	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	9.13E-03
52	GO:0004550: nucleoside diphosphate kinase activity	9.13E-03
53	GO:0016209: antioxidant activity	9.13E-03
54	GO:0003913: DNA photolyase activity	9.13E-03
55	GO:0003746: translation elongation factor activity	9.97E-03
56	GO:0016831: carboxy-lyase activity	1.04E-02
57	GO:0008233: peptidase activity	1.08E-02
58	GO:0016887: ATPase activity	1.15E-02
59	GO:0016868: intramolecular transferase activity, phosphotransferases	1.25E-02
60	GO:0016987: sigma factor activity	1.25E-02
61	GO:0008173: RNA methyltransferase activity	1.62E-02
62	GO:0016817: hydrolase activity, acting on acid anhydrides	1.62E-02
63	GO:0004568: chitinase activity	2.03E-02
64	GO:0004222: metalloendopeptidase activity	2.31E-02
65	GO:0004784: superoxide dismutase activity	2.47E-02
66	GO:0043022: ribosome binding	2.47E-02
67	GO:0008266: poly(U) RNA binding	2.94E-02
68	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.45E-02
69	GO:0008236: serine-type peptidase activity	3.84E-02
70	GO:0003723: RNA binding	3.87E-02
71	GO:0000287: magnesium ion binding	4.20E-02
72	GO:0005524: ATP binding	4.40E-02
73	GO:0000166: nucleotide binding	4.47E-02
74	GO:0003690: double-stranded DNA binding	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
4	GO:0031361: integral component of thylakoid membrane	0.00E+00
5	GO:0043235: receptor complex	0.00E+00
6	GO:0009507: chloroplast	1.42E-35
7	GO:0009570: chloroplast stroma	5.70E-25
8	GO:0009941: chloroplast envelope	2.58E-23
9	GO:0009535: chloroplast thylakoid membrane	1.62E-12
10	GO:0009579: thylakoid	1.17E-11
11	GO:0009532: plastid stroma	6.60E-10
12	GO:0009840: chloroplastic endopeptidase Clp complex	2.46E-07
13	GO:0009295: nucleoid	5.69E-04
14	GO:0009706: chloroplast inner membrane	5.76E-04
15	GO:0009534: chloroplast thylakoid	8.34E-04
16	GO:0044445: cytosolic part	1.60E-03
17	GO:0080085: signal recognition particle, chloroplast targeting	1.60E-03
18	GO:0009526: plastid envelope	1.60E-03
19	GO:0005960: glycine cleavage complex	1.60E-03
20	GO:0048500: signal recognition particle	1.68E-03
21	GO:0010319: stromule	1.71E-03
22	GO:0009536: plastid	1.93E-03
23	GO:0009533: chloroplast stromal thylakoid	3.62E-03
24	GO:0005759: mitochondrial matrix	4.92E-03
25	GO:0048046: apoplast	6.31E-03
26	GO:0019013: viral nucleocapsid	1.70E-02
27	GO:0005875: microtubule associated complex	4.14E-02
28	GO:0031977: thylakoid lumen	4.76E-02