co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AC199526.5_FGT003

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
2	GO:1901259: chloroplast rRNA processing	0.00E+00
3	GO:0010028: xanthophyll cycle	0.00E+00
4	GO:0090342: regulation of cell aging	0.00E+00
5	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
6	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
7	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
8	GO:0042821: pyridoxal biosynthetic process	0.00E+00
9	GO:0016050: vesicle organization	0.00E+00
10	GO:0010027: thylakoid membrane organization	6.98E-21
11	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.06E-11
12	GO:0015995: chlorophyll biosynthetic process	6.12E-09
13	GO:0009073: aromatic amino acid family biosynthetic process	1.56E-08
14	GO:0016226: iron-sulfur cluster assembly	4.10E-08
15	GO:0006364: rRNA processing	8.32E-08
16	GO:0009684: indoleacetic acid biosynthetic process	1.03E-07
17	GO:0006098: pentose-phosphate shunt	2.02E-07
18	GO:0009902: chloroplast relocation	3.19E-07
19	GO:0045036: protein targeting to chloroplast	4.24E-07
20	GO:0006569: tryptophan catabolic process	4.69E-07
21	GO:0042793: transcription from plastid promoter	6.25E-07
22	GO:0016117: carotenoid biosynthetic process	7.82E-07
23	GO:0006636: unsaturated fatty acid biosynthetic process	8.94E-07
24	GO:0043085: positive regulation of catalytic activity	7.73E-06
25	GO:0006655: phosphatidylglycerol biosynthetic process	3.21E-05
26	GO:0045038: protein import into chloroplast thylakoid membrane	3.44E-05
27	GO:0019748: secondary metabolic process	6.37E-05
28	GO:0034660: ncRNA metabolic process	1.52E-04
29	GO:0009106: lipoate metabolic process	1.52E-04
30	GO:0006766: vitamin metabolic process	1.52E-04
31	GO:0009814: defense response, incompatible interaction	1.52E-04
32	GO:0009108: coenzyme biosynthetic process	1.52E-04
33	GO:0010207: photosystem II assembly	1.81E-04
34	GO:0045893: positive regulation of transcription, DNA-templated	2.32E-04
35	GO:0006427: histidyl-tRNA aminoacylation	3.27E-04
36	GO:0009443: pyridoxal 5'-phosphate salvage	3.27E-04
37	GO:0019761: glucosinolate biosynthetic process	4.26E-04
38	GO:0006354: DNA-templated transcription, elongation	4.56E-04
39	GO:0006546: glycine catabolic process	5.56E-04
40	GO:0000023: maltose metabolic process	6.23E-04
41	GO:0009658: chloroplast organization	6.79E-04
42	GO:0044272: sulfur compound biosynthetic process	7.69E-04
43	GO:0051555: flavonol biosynthetic process	7.69E-04
44	GO:0010253: UDP-rhamnose biosynthetic process	7.69E-04
45	GO:0042372: phylloquinone biosynthetic process	7.69E-04
46	GO:0010192: mucilage biosynthetic process	7.69E-04
47	GO:0009688: abscisic acid biosynthetic process	7.69E-04
48	GO:0005987: sucrose catabolic process	7.69E-04
49	GO:0009225: nucleotide-sugar metabolic process	7.69E-04
50	GO:0015996: chlorophyll catabolic process	9.26E-04
51	GO:0006631: fatty acid metabolic process	1.22E-03
52	GO:0030154: cell differentiation	1.22E-03
53	GO:0045226: extracellular polysaccharide biosynthetic process	1.31E-03
54	GO:0043067: regulation of programmed cell death	1.31E-03
55	GO:0009247: glycolipid biosynthetic process	1.31E-03
56	GO:0007186: G-protein coupled receptor signaling pathway	1.31E-03
57	GO:0006733: oxidoreduction coenzyme metabolic process	1.31E-03
58	GO:0010731: protein glutathionylation	1.31E-03
59	GO:0035304: regulation of protein dephosphorylation	1.75E-03
60	GO:0009773: photosynthetic electron transport in photosystem I	1.75E-03
61	GO:0046777: protein autophosphorylation	1.75E-03
62	GO:0019216: regulation of lipid metabolic process	1.91E-03
63	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.91E-03
64	GO:0051205: protein insertion into membrane	1.91E-03
65	GO:0009117: nucleotide metabolic process	1.91E-03
66	GO:0045037: protein import into chloroplast stroma	1.91E-03
67	GO:0010214: seed coat development	1.91E-03
68	GO:0009695: jasmonic acid biosynthetic process	1.94E-03
69	GO:0009813: flavonoid biosynthetic process	2.55E-03
70	GO:0015994: chlorophyll metabolic process	2.55E-03
71	GO:0000096: sulfur amino acid metabolic process	2.55E-03
72	GO:0010315: auxin efflux	2.55E-03
73	GO:0060416: response to growth hormone	2.55E-03
74	GO:0019252: starch biosynthetic process	2.61E-03
75	GO:0009306: protein secretion	3.29E-03
76	GO:0009735: response to cytokinin	3.33E-03
77	GO:0019344: cysteine biosynthetic process	3.91E-03
78	GO:0015979: photosynthesis	4.01E-03
79	GO:0030003: cellular cation homeostasis	4.12E-03
80	GO:0009704: de-etiolation	4.12E-03
81	GO:0010583: response to cyclopentenone	4.12E-03
82	GO:0010206: photosystem II repair	4.12E-03
83	GO:0006184: obsolete GTP catabolic process	4.95E-03
84	GO:0015693: magnesium ion transport	4.98E-03
85	GO:0006399: tRNA metabolic process	4.98E-03
86	GO:0048481: plant ovule development	5.55E-03
87	GO:0009072: aromatic amino acid family metabolic process	5.91E-03
88	GO:0006418: tRNA aminoacylation for protein translation	5.91E-03
89	GO:0006414: translational elongation	6.69E-03
90	GO:0009407: toxin catabolic process	6.89E-03
91	GO:0048527: lateral root development	7.93E-03
92	GO:0009697: salicylic acid biosynthetic process	7.93E-03
93	GO:0009567: double fertilization forming a zygote and endosperm	7.93E-03
94	GO:0010228: vegetative to reproductive phase transition of meristem	8.39E-03
95	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	9.03E-03
96	GO:0006200: obsolete ATP catabolic process	9.33E-03
97	GO:0009965: leaf morphogenesis	9.82E-03
98	GO:0031408: oxylipin biosynthetic process	1.14E-02
99	GO:0051607: defense response to virus	1.14E-02
100	GO:0005982: starch metabolic process	1.26E-02
101	GO:0044237: cellular metabolic process	1.36E-02
102	GO:0019684: photosynthesis, light reaction	1.52E-02
103	GO:0010155: regulation of proton transport	1.66E-02
104	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.66E-02
105	GO:0006417: regulation of translation	1.66E-02
106	GO:0010267: production of ta-siRNAs involved in RNA interference	1.66E-02
107	GO:0016036: cellular response to phosphate starvation	1.66E-02
108	GO:0048825: cotyledon development	1.66E-02
109	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.66E-02
110	GO:0010103: stomatal complex morphogenesis	1.80E-02
111	GO:0010363: regulation of plant-type hypersensitive response	1.95E-02
112	GO:0010224: response to UV-B	1.95E-02
113	GO:0010182: sugar mediated signaling pathway	1.95E-02
114	GO:0042742: defense response to bacterium	2.64E-02
115	GO:0000413: protein peptidyl-prolyl isomerization	2.74E-02

Rank	GO Term	Adjusted P value
1	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
2	GO:0046510: UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity	0.00E+00
3	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
4	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
7	GO:0005504: fatty acid binding	0.00E+00
8	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
9	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
10	GO:0070402: NADPH binding	3.27E-04
11	GO:0008194: UDP-glycosyltransferase activity	3.27E-04
12	GO:0050377: UDP-glucose 4,6-dehydratase activity	3.27E-04
13	GO:0045174: glutathione dehydrogenase (ascorbate) activity	3.27E-04
14	GO:0010280: UDP-L-rhamnose synthase activity	3.27E-04
15	GO:0004821: histidine-tRNA ligase activity	3.27E-04
16	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.65E-04
17	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	7.69E-04
18	GO:0045430: chalcone isomerase activity	7.69E-04
19	GO:0008460: dTDP-glucose 4,6-dehydratase activity	1.31E-03
20	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	1.31E-03
21	GO:0016872: intramolecular lyase activity	1.31E-03
22	GO:0004765: shikimate kinase activity	1.91E-03
23	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	1.91E-03
24	GO:0070569: uridylyltransferase activity	1.91E-03
25	GO:0016817: hydrolase activity, acting on acid anhydrides	3.29E-03
26	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	4.12E-03
27	GO:0003746: translation elongation factor activity	4.86E-03
28	GO:0043022: ribosome binding	4.98E-03
29	GO:0004575: sucrose alpha-glucosidase activity	4.98E-03
30	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	5.91E-03
31	GO:0004812: aminoacyl-tRNA ligase activity	6.69E-03
32	GO:0015095: magnesium ion transmembrane transporter activity	6.89E-03
33	GO:0046873: metal ion transmembrane transporter activity	6.89E-03
34	GO:0008237: metallopeptidase activity	7.93E-03
35	GO:0005216: ion channel activity	1.39E-02
36	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.52E-02
37	GO:0016887: ATPase activity	1.54E-02
38	GO:0005525: GTP binding	1.56E-02
39	GO:0008565: protein transporter activity	2.10E-02
40	GO:0003924: GTPase activity	2.15E-02
41	GO:0050662: coenzyme binding	2.40E-02
42	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.09E-02
43	GO:0016853: isomerase activity	4.18E-02
44	GO:0004364: glutathione transferase activity	4.21E-02
45	GO:0003824: catalytic activity	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0031361: integral component of thylakoid membrane	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	1.89E-23
4	GO:0009570: chloroplast stroma	2.14E-13
5	GO:0009535: chloroplast thylakoid membrane	3.32E-10
6	GO:0009941: chloroplast envelope	2.64E-09
7	GO:0009543: chloroplast thylakoid lumen	8.04E-09
8	GO:0009534: chloroplast thylakoid	1.98E-07
9	GO:0009295: nucleoid	2.78E-07
10	GO:0031977: thylakoid lumen	3.51E-05
11	GO:0009508: plastid chromosome	6.37E-05
12	GO:0009528: plastid inner membrane	3.27E-04
13	GO:0009527: plastid outer membrane	3.27E-04
14	GO:0019031: viral envelope	3.27E-04
15	GO:0009579: thylakoid	1.30E-03
16	GO:0031225: anchored component of membrane	3.29E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.29E-03
18	GO:0009532: plastid stroma	4.98E-03
19	GO:0009706: chloroplast inner membrane	2.41E-02
20	GO:0009523: photosystem II	3.09E-02
21	GO:0015934: large ribosomal subunit	3.82E-02
22	GO:0010319: stromule	3.82E-02